RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 E7ENQ6 273 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 TULP2O00295 520 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 IRAK2O43187 625 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 LATO43561 262 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 CUTAO60888 179 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 USP12O75317 370 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 DXOO77932 396 aaKnown RBP13.21□□□□□ -0.29
SS18-219ENST00000581570 ADH1BP00325 375 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 SRPRAP08240 638 aaKnown RBP13.21□□□□□ -0.29
SS18-219ENST00000581570 TRIM49P0CI25 452 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 TRIM49CP0CI26 452 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 SLC6A4P31645 630 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 LSSP48449 732 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 SLC11A2P49281 568 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 RAD23BP54727 409 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 ERVPABLB-1P60509 514 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 PPP2CBP62714 309 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 PPP2CAP67775 309 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 PPP3CAQ08209 521 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 VAC14Q08AM6 782 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 OVGP1Q12889 678 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 STAT4Q14765 748 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 HS1BP3Q53T59 392 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 CDCP2Q5VXM1 449 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.21□□□□□ -0.29
SS18-219ENST00000581570 IQCHQ86VS3 1027 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 UNC45BQ8IWX7 931 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 STK40Q8N2I9 435 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 TTC39CQ8N584 583 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 KIAA0895Q8NCT3 520 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 MED8Q96G25 268 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 DEPDC7Q96QD5 511 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 DPH1Q9BZG8 443 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 MMRN2Q9H8L6 949 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 ABCC13Q9NSE7 274 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 ARHGAP20Q9P2F6 1191 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 MTMR6Q9Y217 621 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 CFAP46Q8IYW2 2715 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 MYLKQ15746 1914 aa13.21□□□□□ -0.3
SS18-219ENST00000581570 MGAQ8IWI9 3026 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 XPO1O14980 1071 aaKnown RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 OPA1O60313 960 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 ACSL4O60488 711 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 IL1BP01584 269 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 PDIA4P13667 645 aaKnown RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 MAT2AP31153 395 aaKnown RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 NUDT1P36639 197 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 CTSOP43234 321 aaPredicted RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 ADIGQ0VDE8 80 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 GSE1Q14687 1217 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 GOLGA7BQ2TAP0 167 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 FAM133BQ5BKY9 247 aaKnown RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 CCDC117Q8IWD4 279 aaPredicted RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 GRAMD1CQ8IYS0 662 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 SLC25A45Q8N413 288 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 CARNMT1Q8N4J0 409 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 HJURPQ8NCD3 748 aaPredicted RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 SNRNP27Q8WVK2 155 aaKnown RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 TATDN2Q93075 761 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 DDX50Q9BQ39 737 aaKnown RBP13.2□□□□□ -0.3
SS18-219ENST00000581570 POLR1BQ9H9Y6 1135 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 CISHQ9NSE2 258 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 EXOC1Q9NV70 894 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 SLCO3A1Q9UIG8 710 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 DMTF1Q9Y222 760 aa13.2□□□□□ -0.3
SS18-219ENST00000581570 ITIH6Q6UXX5 1313 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 MAST4O15021 2626 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 TYW5A2RUC4 315 aaKnown RBP13.19□□□□□ -0.3
SS18-219ENST00000581570 MAPK13O15264 365 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 CALUO43852 315 aaPredicted RBP13.19□□□□□ -0.3
SS18-219ENST00000581570 KLRC4O43908 158 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 MOCS3O95396 460 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 KRT13P13646 458 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 CLCN6P51797 869 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 RPS24P62847 133 aaKnown RBP13.19□□□□□ -0.3
SS18-219ENST00000581570 ECT2LQ008S8 904 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 CDH18Q13634 790 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 FSCBQ5H9T9 825 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 PITRM1Q5JRX3 1037 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 RNF219Q5W0B1 726 aaPredicted RBP13.19□□□□□ -0.3
SS18-219ENST00000581570 NUGGCQ68CJ6 796 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 MMS22LQ6ZRQ5 1243 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 INTS8Q75QN2 995 aaKnown RBP13.19□□□□□ -0.3
SS18-219ENST00000581570 TMC6Q7Z403 805 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 SIX6OS1Q8N1H7 587 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 OR4C6Q8NH72 309 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 PTPRN2Q92932 1015 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 AZIN2Q96A70 460 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 KLHDC7BQ96G42 594 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 FAXDC2Q96IV6 333 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 VCPIP1Q96JH7 1222 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 KDM4CQ9H3R0 1056 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 TMEM8AQ9HCN3 771 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 THSD1Q9NS62 852 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 HESX1Q9UBX0 185 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 CYTH4Q9UIA0 394 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 TSPAN16Q9UKR8 245 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 CEP83Q9Y592 693 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 ATMQ13315 3056 aa13.19□□□□□ -0.3
SS18-219ENST00000581570 FFAR2O15552 330 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms