RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 THAP4Q8WY91 577 aa5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 ATP2A3Q93084 1043 aa5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 ADAD1Q96M93 576 aaKnown RBP5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 NPAS1Q99742 590 aa5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 SPRTNQ9H040 489 aaPredicted RBP5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 G6PC2Q9NQR9 355 aa5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 ITM2CQ9NQX7 267 aa5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 RCE1Q9Y256 329 aa5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 PCDHGB3Q9Y5G1 929 aa5.07□□□□□ -1.6
SMCHD1-204ENST00000581226 DPPA5A6NC42 116 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 MCIDASD6RGH6 385 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 GRM8O00222 908 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 IRAK2O43187 625 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 NFATC1O95644 943 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 TOP3BO95985 862 aaKnown RBP5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 FGBP02675 491 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 ARL4CP56559 192 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 CDK18Q07002 472 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 PGM5Q15124 567 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 RABEP1Q15276 862 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 SMAD1Q15797 465 aaKnown RBP5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 C10orf76Q5T2E6 689 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 LDHAL6AQ6ZMR3 332 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 MDGA2Q7Z553 956 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 FTSJ3Q8IY81 847 aaKnown RBP5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 PAQR4Q8N4S7 273 aaPredicted RBP5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 C16orf52Q8NHV5 167 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 PIGOQ8TEQ8 1089 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 IGFBPL1Q8WX77 278 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 KCNJ9Q92806 393 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 RILPL2Q969X0 211 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 SDCCAG3Q96C92 435 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 COQ8BQ96D53 544 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 ZNF778Q96MU6 729 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 TUBB6Q9BUF5 446 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 ARHGAP39Q9C0H5 1083 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 CHODLQ9H9P2 273 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 TXNRD2Q9NNW7 524 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 PAPOLBQ9NRJ5 636 aaKnown RBP5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 RNF7Q9UBF6 113 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 TNFSF13BQ9Y275 285 aa5.06□□□□□ -1.6
SMCHD1-204ENST00000581226 ZMYM2Q9UBW7 1377 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 F8W810 466 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 PRPF4O43172 522 aaKnown RBP eCLIP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 SEPT4O43236 478 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 EIF3JO75822 258 aaKnown RBP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 TFRCP02786 760 aaKnown RBP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 CHN1P15882 459 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 PRPH2P23942 346 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 CIITAP33076 1130 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 ZRSR2Q15696 482 aaKnown RBP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 INO80DQ53TQ3 878 aaPredicted RBP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 LRIG3Q6UXM1 1119 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 RASGRP2Q7LDG7 609 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 ANKS1BQ7Z6G8 1248 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 TMEM200AQ86VY9 491 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 PTGR2Q8N8N7 351 aaPredicted RBP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 ENDOVQ8N8Q3 282 aaKnown RBP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 SPPL3Q8TCT6 385 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 WIPF2Q8TF74 440 aaPredicted RBP5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 PIMREGQ9BSJ6 248 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 ISCA1Q9BUE6 129 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 TWSG1Q9GZX9 223 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 CLPBQ9H078 707 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 PLEKHA2Q9HB19 425 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 SLC25A13Q9UJS0 675 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 UTS2RQ9UKP6 389 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 FBXO4Q9UKT5 387 aa5.05□□□□□ -1.6
SMCHD1-204ENST00000581226 B9A039 149 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 PPEF2O14830 753 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 MSI1O43347 362 aaKnown RBP5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 CNOT3O75175 753 aaKnown RBP5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 HOXB9P17482 250 aaPredicted RBP5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 RXRAP19793 462 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 MCM2P49736 904 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 PLCD1P51178 756 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 ACTR2P61160 394 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 ALKBH1Q13686 389 aaKnown RBP5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 DHX8Q14562 1220 aaKnown RBP5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 RBMS2Q15434 407 aaKnown RBP5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 MIDNQ504T8 468 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 ARL13AQ5H913 290 aaPredicted RBP5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 KIAA1755Q5JYT7 1200 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 C11orf87Q6NUJ2 197 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 CYB5R4Q7L1T6 521 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 TMEM57Q8N5G2 664 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 IP6K1Q92551 441 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 KTI12Q96EK9 354 aaPredicted RBP5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 SCLT1Q96NL6 688 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 C1QTNF7Q9BXJ2 289 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 HDHD5Q9BXW7 423 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 TRIM31Q9BZY9 425 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 RMI1Q9H9A7 625 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 ARL15Q9NXU5 204 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 FEM1BQ9UK73 627 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 DTX4Q9Y2E6 619 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 PKP3Q9Y446 797 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 PCSK5Q92824 1860 aa5.04□□□□□ -1.6
SMCHD1-204ENST00000581226 ZNF335Q9H4Z2 1342 aaPredicted RBP5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms