RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 SRGAP2BP0DMP2 458 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 PTPN3P26045 913 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 COG7P83436 770 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 RING1Q06587 406 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 MTA1Q13330 715 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 BTG3Q14201 252 aaPredicted RBP29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 SPOUT1Q5T280 376 aaKnown RBP29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 SNX30Q5VWJ9 437 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 DDX53Q86TM3 631 aaKnown RBP29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 EXOC3L1Q86VI1 746 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 IGDCC3Q8IVU1 814 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 SPG21Q9NZD8 308 aa29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 MRPL42Q9Y6G3 142 aaKnown RBP29.2■■■□□ 2.26
CTDNEP1-210ENST00000574322 RPL17P18621 184 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 SSTR1P30872 391 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 SARNPP82979 210 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 EFEMP1Q12805 493 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 SKIDA1Q1XH10 827 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 FAM182AQ5T1J6 154 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 RWDD4Q6NW29 188 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 ZNF683Q8IZ20 524 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 AGGF1Q8N302 714 aaeCLIP29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 MAML1Q92585 1016 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 CDK5RAP1Q96SZ6 601 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 MARCH2Q9P0N8 246 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 TRHDEQ9UKU6 1024 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 ACTL7BQ9Y614 415 aa29.19■■■□□ 2.26
CTDNEP1-210ENST00000574322 E9PAM4 449 aa29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 DMTNQ08495 405 aa29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 NR1H3Q13133 447 aa29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 PIK3R6Q5UE93 754 aa29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 AFMIDQ63HM1 303 aa29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 TADA2BQ86TJ2 420 aa29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 ARHGEF2Q92974 986 aaKnown RBP29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 CENPTQ96BT3 561 aa29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 PPARGC1AQ9UBK2 798 aaKnown RBP29.18■■■□□ 2.26
CTDNEP1-210ENST00000574322 TLL1O43897 1013 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 APOEP02649 317 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 GSTA2P09210 222 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 KPNA1P52294 538 aaPredicted RBP29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 GUCY1A3Q02108 690 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 KLHL38Q2WGJ6 581 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 FAM109BQ6ICB4 259 aaPredicted RBP29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 ARHGAP12Q8IWW6 846 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 ATP6V0D2Q8N8Y2 350 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 PDZD8Q8NEN9 1154 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 ZSCAN18Q8TBC5 510 aaPredicted RBP29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 GIPC2Q8TF65 315 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 BTN2A3PQ96KV6 586 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 DHRS4Q9BTZ2 278 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 CTNNAL1Q9UBT7 734 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 CHMP2BQ9UQN3 213 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 INSL6Q9Y581 213 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 GRXCR1A8MXD5 290 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 AVILO75366 819 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 CCNCP24863 283 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 TUBP50607 506 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 C10orf120Q5SQS8 335 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 SYCP2LQ5T4T6 812 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 LRRC49Q8IUZ0 686 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 RTL3Q8N8U3 475 aaKnown RBP29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 RAD9AQ99638 391 aa29.17■■■□□ 2.26
CTDNEP1-210ENST00000574322 NUP205Q92621 2012 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 KCNK1O00180 336 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 TBX18O95935 607 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 GEMIN4P57678 1058 aaKnown RBP29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 HTRA4P83105 476 aaPredicted RBP29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 RAB33AQ14088 237 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 PRPF38BQ5VTL8 546 aaKnown RBP29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 PID1Q7Z2X4 250 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 C14orf80Q86SX3 495 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 CYP4X1Q8N118 509 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 SIGLEC10Q96LC7 697 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 MYRFLQ96LU7 910 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 SEPT10Q9P0V9 454 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 MAFFQ9ULX9 164 aa29.16■■■□□ 2.26
CTDNEP1-210ENST00000574322 IGLV3-10A0A075B6K4 115 aa29.15■■■□□ 2.26
CTDNEP1-210ENST00000574322 SEC24AO95486 1093 aa29.15■■■□□ 2.26
CTDNEP1-210ENST00000574322 MOCS2O96007 188 aaPredicted RBP29.15■■■□□ 2.26
CTDNEP1-210ENST00000574322 TEX44Q53QW1 395 aa29.15■■■□□ 2.26
CTDNEP1-210ENST00000574322 LRRC8BQ6P9F7 803 aa29.15■■■□□ 2.26
CTDNEP1-210ENST00000574322 FBF1Q8TES7 1133 aa29.15■■■□□ 2.26
CTDNEP1-210ENST00000574322 STK39Q9UEW8 545 aa29.15■■■□□ 2.26
CTDNEP1-210ENST00000574322 PTPRSQ13332 1948 aa29.15■■■□□ 2.26
CTDNEP1-210ENST00000574322 HSFX4A0A1B0GTS1 333 aaPredicted RBP29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 HSFX3A0A1B0GWH4 333 aaPredicted RBP29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 C2CD2LO14523 706 aa29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 PSMB4P28070 264 aa29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 LSP1P33241 339 aa29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 PPM1AP35813 382 aa29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 MS4A13Q5J8X5 152 aa29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 ZNF771Q7L3S4 317 aaPredicted RBP29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 NLRP14Q86W24 1093 aa29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 DONSONQ9NYP3 566 aa29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 KLHL8Q9P2G9 620 aaPredicted RBP29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 HBS1LQ9Y450 684 aaKnown RBP29.14■■■□□ 2.26
CTDNEP1-210ENST00000574322 TLR5O60602 858 aa29.14■■■□□ 2.25
CTDNEP1-210ENST00000574322 CSH1P0DML2 217 aa29.14■■■□□ 2.25
CTDNEP1-210ENST00000574322 CSH2P0DML3 217 aa29.14■■■□□ 2.25
CTDNEP1-210ENST00000574322 HMGA1P17096 107 aaKnown RBP29.14■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms