RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ACLYP53396 1101 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 NAPAP54920 295 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 CASP6P55212 293 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 CREMQ03060 361 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 UBXN1Q04323 297 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 RASA2Q15283 850 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 SURF1Q15526 300 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 VMACQ2NL98 169 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 TAPT1Q6NXT6 567 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 RPUSD3Q6P087 351 aaKnown RBP6.51□□□□□ -1.37
VPS53-212ENST00000572259 UNC5DQ6UXZ4 953 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 B4GALNT4Q76KP1 1039 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 RAB11FIP4Q86YS3 637 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 EPHX4Q8IUS5 362 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 OR6J1Q8NGC5 347 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 OR5AN1Q8NGI8 311 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 OR14C36Q8NHC7 312 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 BICD2Q8TD16 824 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 AUTS2Q8WXX7 1259 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 JAKMIP2Q96AA8 810 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 DYDC2Q96IM9 177 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 MSLNLQ96KJ4 702 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 SLC2A13Q96QE2 648 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 GPATCH1Q9BRR8 931 aaKnown RBP6.51□□□□□ -1.37
VPS53-212ENST00000572259 ANP32EQ9BTT0 268 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 KATNBL1Q9H079 304 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 BARX1Q9HBU1 254 aaPredicted RBP6.51□□□□□ -1.37
VPS53-212ENST00000572259 PDGFCQ9NRA1 345 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 DPP7Q9UHL4 492 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 PRSS50Q9UI38 385 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 ATP11BQ9Y2G3 1177 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 IKBKGQ9Y6K9 419 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 A0A1B0GTL3 188 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 SMCO2A6NFE2 343 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 H0Y3Z8 333 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 H0YGN5 161 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 FFAR3O14843 346 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 KLHL18O94889 574 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 SCGB1D1O95968 90 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 ADRB2P07550 413 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 THEGLP0DJG4 465 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 SCG2P13521 617 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 CPA1P15085 419 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 IFNAR1P17181 557 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 GPR15P49685 360 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 MRE11P49959 708 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 ADCY7P51828 1080 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 NRG3P56975 720 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 UBASH3AP57075 661 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 EVCP57679 992 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 CDK17Q00537 523 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 DLX2Q07687 328 aaPredicted RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 TRIM25Q14258 630 aaKnown RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 NEDD9Q14511 834 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 PGM5Q15124 567 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 ASIC2Q16515 512 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 PFKFB3Q16875 520 aaPredicted RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 TIGD6Q17RP2 521 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 LRRC26Q2I0M4 334 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 TMEM200BQ69YZ2 307 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 CNSTQ6PJW8 725 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 RAPH1Q70E73 1250 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 LINC01356Q8N9X3 169 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 NUDT10Q8NFP7 164 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 CCDC148Q8NFR7 591 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 RIN2Q8WYP3 895 aaPredicted RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 RUBCNQ92622 972 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 ZUFSPQ96AP4 578 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 NUDT11Q96G61 164 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 TOX2Q96NM4 488 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 KCNC2Q96PR1 638 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 SPATA25Q9BR10 227 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 RNF26Q9BY78 433 aaPredicted RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 UPF3BQ9BZI7 483 aaKnown RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 MLXIPQ9HAP2 919 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 XAB2Q9HCS7 855 aaKnown RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 C6orf50Q9HD87 102 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 TM7SF3Q9NS93 570 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 POLR3BQ9NW08 1133 aaPredicted RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 BARHL2Q9NY43 387 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 TMPRSS11EQ9UL52 423 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 ARHGAP26Q9UNA1 814 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 ZDHHC9Q9Y397 364 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 SNX8Q9Y5X2 465 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 ZFP37Q9Y6Q3 630 aaPredicted RBP6.5□□□□□ -1.37
VPS53-212ENST00000572259 ALPK3Q96L96 1907 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 ASTN1O14525 1302 aa6.5□□□□□ -1.37
VPS53-212ENST00000572259 MYH9P35579 1960 aaKnown RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 TRIP12Q14669 1992 aaPredicted RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 MEIS2O14770 477 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 SUPT20HL2P0C7V6 817 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 ZSCAN22P10073 491 aaPredicted RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 PORP16435 677 aaPredicted RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 CTSSP25774 331 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 MSH2P43246 934 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 MEOX1P50221 254 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 CCT2P78371 535 aaKnown RBP6.49□□□□□ -1.37
VPS53-212ENST00000572259 BEX3Q00994 111 aa6.49□□□□□ -1.37
VPS53-212ENST00000572259 UBE3AQ05086 875 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms