RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 LTFP02788 710 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 ZNF286BP0CG31 522 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 AOC1P19801 751 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 ACAT1P24752 427 aaKnown RBP14.83□□□□□ -0.04
VPS35-210ENST00000568784 C11orf91Q3C1V1 193 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 SLC10A6Q3KNW5 377 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 CMPK2Q5EBM0 449 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 KYQ8NBH2 561 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 PDGFCQ9NRA1 345 aa14.83□□□□□ -0.04
VPS35-210ENST00000568784 ARF4P18085 180 aaPredicted RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 FDFT1P37268 417 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 CYLC2Q14093 348 aaPredicted RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 DBN1Q16643 649 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 CCDC142Q17RM4 750 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 PQLC1Q8N2U9 271 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 NPAS2Q99743 824 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SNTG2Q9NY99 539 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 FAF1Q9UNN5 650 aaPredicted RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 ADCY6O43306 1168 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 TRIM13O60858 407 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 IQCF3P0C7M6 154 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 XRCC1P18887 633 aaPredicted RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 PLK1P53350 603 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 NME5P56597 212 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 TNFAIP2Q03169 654 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 CERCAMQ5T4B2 595 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SEL1L3Q68CR1 1132 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 AAGABQ6PD74 315 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 EGFL6Q8IUX8 553 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 MAPK15Q8TD08 544 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 CELF6Q96J87 481 aaKnown RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 SIK2Q9H0K1 926 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SNNO75324 88 aaPredicted RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 CD1EP15812 388 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 PGAM1P18669 254 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 AKAP5P24588 427 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 PIK3R1P27986 724 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 BAG6P46379 1132 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 THOP1P52888 689 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 MPP3Q13368 585 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 RWDD4Q6NW29 188 aaKnown RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 ZBTB46Q86UZ6 589 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SPNS2Q8IVW8 549 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SIX6OS1Q8N1H7 587 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 ZNF670Q9BS34 389 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 FAM96AQ9H5X1 160 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SUDS3Q9H7L9 328 aaPredicted RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 NMRAL1Q9HBL8 299 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 RUVBL2Q9Y230 463 aaKnown RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 SNX13Q9Y5W8 968 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 ANKRD12Q6UB98 2062 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 EEF2KO00418 725 aaKnown RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 INHBEP58166 350 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 ENPEPQ07075 957 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 GK3PQ14409 553 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SOWAHAQ2M3V2 549 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 POTEAQ6S8J7 498 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 TSHZ1Q6ZSZ6 1077 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SLC7A14Q8TBB6 771 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SLC2A14Q8TDB8 520 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 C18orf25Q96B23 403 aaPredicted RBP14.82□□□□□ -0.04
VPS35-210ENST00000568784 APBA2Q99767 749 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 R3HDMLQ9H3Y0 253 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 CYP3A43Q9HB55 503 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.82□□□□□ -0.04
VPS35-210ENST00000568784 EMCNQ9ULC0 261 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 VANGL2Q9ULK5 521 aa14.82□□□□□ -0.04
VPS35-210ENST00000568784 SOWAHBA6NEL2 793 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 C2P06681 752 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 SPATA31D3P0C874 917 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 THRAP10827 490 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 CPOXP36551 454 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 USP46P62068 366 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 PITX1P78337 314 aaPredicted RBP14.81□□□□□ -0.04
VPS35-210ENST00000568784 LCLAT1Q6UWP7 414 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 SPATA31D4Q6ZUB0 917 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 RYBPQ8N488 228 aaPredicted RBP14.81□□□□□ -0.04
VPS35-210ENST00000568784 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.81□□□□□ -0.04
VPS35-210ENST00000568784 DIS3LQ8TF46 1054 aaKnown RBP14.81□□□□□ -0.04
VPS35-210ENST00000568784 ATXN3LQ9H3M9 355 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 PNPLA8Q9NP80 782 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 ITGA11Q9UKX5 1188 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 C19orf81C9J6K1 198 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 L1CAMP32004 1257 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 ADIGQ0VDE8 80 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 ZNF460Q14592 562 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 TARBP2Q15633 366 aaKnown RBP14.81□□□□□ -0.04
VPS35-210ENST00000568784 CCT7Q99832 543 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 GATA5Q9BWX5 397 aaPredicted RBP14.81□□□□□ -0.04
VPS35-210ENST00000568784 DOCK5Q9H7D0 1870 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 EPS15L1Q9UBC2 864 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 CNTFP26441 200 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 DGKDQ16760 1214 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 AMIGO2Q86SJ2 522 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 BCO2Q9BYV7 579 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 SMARCAD1Q9H4L7 1026 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 PLAC1Q9HBJ0 212 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 TNFSF13BQ9Y275 285 aa14.81□□□□□ -0.04
VPS35-210ENST00000568784 CSADQ9Y600 493 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms