RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 MYO19Q96H55 970 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 MRGPRX3Q96LB0 322 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 NPY6RQ99463 290 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 SLCO3A1Q9UIG8 710 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 STAP1Q9ULZ2 295 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 GOLGA8SH3BPF8 625 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 ARHGAP33O14559 1287 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 LSM8O95777 96 aaKnown RBP21.39■■□□□ 1.01
CLN3-219ENST00000565778 F9P00740 461 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 PDGFRAP16234 1089 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 ACSL1P33121 698 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 NNMTP40261 264 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 NUMBP49757 651 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 SULT1E1P49888 294 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 COPB1P53618 953 aaKnown RBP21.39■■□□□ 1.01
CLN3-219ENST00000565778 OXCT1P55809 520 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 DEUP1Q05D60 604 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 HNRNPA1L2Q32P51 320 aaKnown RBP21.39■■□□□ 1.01
CLN3-219ENST00000565778 C2CD6Q53TS8 623 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 CCDC183Q5T5S1 534 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 SH3PXD2AQ5TCZ1 1133 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 ZNF776Q68DI1 518 aaPredicted RBP21.39■■□□□ 1.01
CLN3-219ENST00000565778 XYLT1Q86Y38 959 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 DHX40Q8IX18 779 aaKnown RBP21.39■■□□□ 1.01
CLN3-219ENST00000565778 HDDC3Q8N4P3 179 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 KDM1BQ8NB78 822 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 EPS8L1Q8TE68 723 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 GANCQ8TET4 914 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 IGSF8Q969P0 613 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 RPL10LQ96L21 214 aaKnown RBP21.39■■□□□ 1.01
CLN3-219ENST00000565778 SPAG5Q96R06 1193 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 PPP1R9BQ96SB3 815 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 PIGVQ9NUD9 493 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 VANGL2Q9ULK5 521 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 NCKAP1Q9Y2A7 1128 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 HS3ST4Q9Y661 456 aa21.39■■□□□ 1.01
CLN3-219ENST00000565778 CEP192Q8TEP8 1941 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.38■■□□□ 1.01
CLN3-219ENST00000565778 A0A1B0GVM2 712 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 TCAF2A6NFQ2 919 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 TTC34A8MYJ7 566 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 SIN3BO75182 1162 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 PAGE1O75459 146 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 TFE3P19532 575 aaPredicted RBP21.38■■□□□ 1.01
CLN3-219ENST00000565778 MZF1P28698 734 aaPredicted RBP21.38■■□□□ 1.01
CLN3-219ENST00000565778 SCNN1AP37088 669 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 ZNF177Q13360 481 aaPredicted RBP21.38■■□□□ 1.01
CLN3-219ENST00000565778 TTC31Q49AM3 519 aaPredicted RBP21.38■■□□□ 1.01
CLN3-219ENST00000565778 BRMS1LQ5PSV4 323 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 NAA35Q5VZE5 725 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 ZNF677Q86XU0 584 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 BTBD1Q9H0C5 482 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 TKTL2Q9H0I9 626 aa21.38■■□□□ 1.01
CLN3-219ENST00000565778 RSPH9Q9H1X1 276 aaPredicted RBP21.38■■□□□ 1.01
CLN3-219ENST00000565778 LIMA1Q9UHB6 759 aaKnown RBP21.38■■□□□ 1.01
CLN3-219ENST00000565778 EIF2B4Q9UI10 523 aaKnown RBP21.38■■□□□ 1.01
CLN3-219ENST00000565778 A0A1B0GTW7 788 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 TARSL2A2RTX5 802 aaKnown RBP21.37■■□□□ 1.01
CLN3-219ENST00000565778 GIPC1O14908 333 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 OPHN1O60890 802 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 ADCY5O95622 1261 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 ZNF18P17022 549 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 SOX5P35711 763 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 GGCXP38435 758 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 STAT1P42224 750 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 CXCR3P49682 368 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 PLK1P53350 603 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 CENPCQ03188 943 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 UBXN1Q04323 297 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 SYCP1Q15431 976 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 SLC25A52Q3SY17 297 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 C9orf64Q5T6V5 341 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 C14orf80Q86SX3 495 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 MINDY1Q8N5J2 469 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 NEK11Q8NG66 645 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 SLC20A1Q8WUM9 679 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 SNX19Q92543 992 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 TBCBQ99426 244 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 PCED1AQ9H1Q7 454 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 PAXBP1Q9Y5B6 917 aa21.37■■□□□ 1.01
CLN3-219ENST00000565778 TNRC6BQ9UPQ9 1833 aaKnown RBP21.36■■□□□ 1.01
CLN3-219ENST00000565778 EDDM13A0A1B0GTR0 161 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 EPHB6O15197 1021 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 C7P10643 843 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 CEACAM1P13688 526 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 CSRP1P21291 193 aaKnown RBP21.36■■□□□ 1.01
CLN3-219ENST00000565778 NOMO3P69849 1222 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 CDR2Q01850 454 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 SULT2A1Q06520 285 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 SFSWAPQ12872 951 aaKnown RBP21.36■■□□□ 1.01
CLN3-219ENST00000565778 ARID5BQ14865 1188 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 LRSAM1Q6UWE0 723 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 OR2I1PQ8NGU4 316 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 NT5C3BQ969T7 300 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 ADAM33Q9BZ11 813 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 SLC32A1Q9H598 525 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 C6orf106Q9H6K1 298 aaPredicted RBP21.36■■□□□ 1.01
CLN3-219ENST00000565778 TMEM51Q9NW97 253 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 ARHGEF38Q9NXL2 777 aa21.36■■□□□ 1.01
CLN3-219ENST00000565778 NOCTQ9UK39 431 aaKnown RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms