RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PAGE1O75459 146 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 ADCY5O95622 1261 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 LSM8O95777 96 aaKnown RBP15.35■□□□□ 0.05
CLN3-213ENST00000565047 CYP1A1P04798 512 aaPredicted RBP15.35■□□□□ 0.05
CLN3-213ENST00000565047 SRPRAP08240 638 aaKnown RBP15.35■□□□□ 0.05
CLN3-213ENST00000565047 ABCB4P21439 1286 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 MZF1P28698 734 aaPredicted RBP15.35■□□□□ 0.05
CLN3-213ENST00000565047 VASPP50552 380 aaPredicted RBP15.35■□□□□ 0.05
CLN3-213ENST00000565047 SNX16P57768 344 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 BNC1Q01954 994 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 SLC12A1Q13621 1099 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 CDH18Q13634 790 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 AUHQ13825 339 aaKnown RBP15.35■□□□□ 0.05
CLN3-213ENST00000565047 SH3PXD2AQ5TCZ1 1133 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 DCAF12L1Q5VU92 463 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 TAF3Q5VWG9 929 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 PSAPL1Q6NUJ1 521 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 ARCQ7LC44 396 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 RABEPKQ7Z6M1 372 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 CACUL1Q86Y37 369 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 FRS2Q8WU20 508 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 SLC20A1Q8WUM9 679 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 C18orf8Q96DM3 657 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 PCED1AQ9H1Q7 454 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 DNAAF2Q9NVR5 837 aaKnown RBP15.35■□□□□ 0.05
CLN3-213ENST00000565047 RRN3Q9NYV6 651 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 SLC12A6Q9UHW9 1150 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 ASCC3Q8N3C0 2202 aaKnown RBP15.35■□□□□ 0.05
CLN3-213ENST00000565047 SYNJ2BP-COX16A0A087WUM0 186 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 A0A1B0GVM2 712 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 TARSL2A2RTX5 802 aaKnown RBP15.34■□□□□ 0.05
CLN3-213ENST00000565047 TYW5A2RUC4 315 aaKnown RBP15.34■□□□□ 0.05
CLN3-213ENST00000565047 TCAF2A6NFQ2 919 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 TTC34A8MYJ7 566 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 H0Y626 953 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 M0QYT0 321 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 CFIP05156 583 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 ACADMP11310 421 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 CEACAM1P13688 526 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 FLT3P36888 993 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 MAPK8P45983 427 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 COPB1P53618 953 aaKnown RBP15.34■□□□□ 0.05
CLN3-213ENST00000565047 SHC2P98077 582 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 ECT2LQ008S8 904 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 FMO1Q01740 532 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 CENPCQ03188 943 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 GFPT1Q06210 699 aaPredicted RBP15.34■□□□□ 0.05
CLN3-213ENST00000565047 NME3Q13232 169 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 MTA1Q13330 715 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 SLC25A52Q3SY17 297 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 C2CD6Q53TS8 623 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 WDR45BQ5MNZ6 344 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 SYCP2LQ5T4T6 812 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 TTC39BQ5VTQ0 682 aaPredicted RBP15.34■□□□□ 0.05
CLN3-213ENST00000565047 OR2I1PQ8NGU4 316 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 PTPRN2Q92932 1015 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 CNTNAP3BQ96NU0 1288 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 CNTNAP3Q9BZ76 1288 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 C6orf106Q9H6K1 298 aaPredicted RBP15.34■□□□□ 0.05
CLN3-213ENST00000565047 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.34■□□□□ 0.05
CLN3-213ENST00000565047 COX16Q9P0S2 106 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 TBC1D30Q9Y2I9 924 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 CEP83Q9Y592 693 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 ADAMTS9Q9P2N4 1935 aa15.34■□□□□ 0.05
CLN3-213ENST00000565047 CACNA1EQ15878 2313 aa15.33■□□□□ 0.05
CLN3-213ENST00000565047 WDFY3Q8IZQ1 3526 aa15.33■□□□□ 0.05
CLN3-213ENST00000565047 DRGXA6NNA5 263 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 PES1O00541 588 aaKnown RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 ENDOD1O94919 500 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 CD59P13987 128 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 SOX5P35711 763 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 GGCXP38435 758 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 STK19P49842 368 aaPredicted RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 NOVA1P51513 510 aaKnown RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 POLR2FP61218 127 aaKnown RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 CDR2Q01850 454 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 PTP4A2Q12974 167 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 NUMA1Q14980 2115 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 BRMS1LQ5PSV4 323 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 ZNF776Q68DI1 518 aaPredicted RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 FAM124AQ86V42 546 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 ERICH1Q86X53 443 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 ZNF677Q86XU0 584 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 DHX40Q8IX18 779 aaKnown RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 RGL4Q8IZJ4 473 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 MINDY1Q8N5J2 469 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 CPA5Q8WXQ8 436 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 RPL10LQ96L21 214 aaKnown RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 C1orf74Q96LT6 269 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 TBCBQ99426 244 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 FEM1AQ9BSK4 669 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 TKTL2Q9H0I9 626 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 PABPC3Q9H361 631 aaKnown RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 OSGEPQ9NPF4 335 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 TMPRSS4Q9NRS4 437 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 FAM207AQ9NSI2 230 aaPredicted RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 ANO10Q9NW15 660 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 ZNF212Q9UDV6 495 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 SERGEFQ9UGK8 458 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 SUSD2Q9UGT4 822 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms