RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 IGSF8Q969P0 613 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 ZSWIM3Q96MP5 696 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 QKIQ96PU8 341 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLK3-214ENST00000564096 KRT12Q99456 494 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 MAGEB5Q9BZ81 275 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 DDX47Q9H0S4 455 aaKnown RBP13.18□□□□□ -0.3
CLK3-214ENST00000564096 POMKQ9H5K3 350 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 ZFP14Q9HCL3 533 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 DTLQ9NZJ0 730 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 MPP6Q9NZW5 540 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 R3HDM2Q9Y2K5 976 aaKnown RBP13.18□□□□□ -0.3
CLK3-214ENST00000564096 USP15Q9Y4E8 981 aaPredicted RBP13.18□□□□□ -0.3
CLK3-214ENST00000564096 MYO7AQ13402 2215 aa13.18□□□□□ -0.3
CLK3-214ENST00000564096 HELZP42694 1942 aaKnown RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 NUP210Q8TEM1 1887 aaPredicted RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 ARHGAP42A6NI28 874 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 H7C0C1 242 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 SCAMP3O14828 347 aaKnown RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 RAMP2O60895 175 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 STK10O94804 968 aaKnown RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 NFATC1O95644 943 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 ITGAVP06756 1048 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 RBP3P10745 1247 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 KCNA5P22460 613 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 OR1E1P30953 314 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 ACTN2P35609 894 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 COILP38432 576 aaPredicted RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 ATP5OP48047 213 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 NDST2P52849 883 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 OXCT1P55809 520 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 ZXDBP98169 803 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 ZNF177Q13360 481 aaPredicted RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 SNX1Q13596 522 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 PARP15Q460N3 678 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 DARS2Q6PI48 645 aaKnown RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 Q7L0L9 218 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 GSTA5Q7RTV2 222 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 SETD3Q86TU7 594 aaPredicted RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 YAF2Q8IY57 180 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 UMODL1-AS1Q8N2C9 162 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 NPWQ8N729 165 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 CCDC89Q8N998 374 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 SLC35B2Q8TB61 432 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 DDI1Q8WTU0 396 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 DEPDC1BQ8WUY9 529 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 OSCP1Q8WVF1 389 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 TFB1MQ8WVM0 346 aaKnown RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 RSAD2Q8WXG1 361 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 SUSD6Q92537 303 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 UBXN4Q92575 508 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 WBP2Q969T9 261 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 TMA16Q96EY4 203 aaKnown RBP13.17□□□□□ -0.3
CLK3-214ENST00000564096 OLFM3Q96PB7 478 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 ETNK2Q9NVF9 386 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 PCYOX1Q9UHG3 505 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 CDH22Q9UJ99 828 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 ZNF148Q9UQR1 794 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 FAM50BQ9Y247 325 aa13.17□□□□□ -0.3
CLK3-214ENST00000564096 FAM187AA6NFU0 413 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 H3BQ06 376 aaPredicted RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 DFFAO00273 331 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 MTSS1O43312 755 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 TSPAN3O60637 253 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 TBL1XO60907 577 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 LUC7L3O95232 432 aaKnown RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 ADH1CP00326 375 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 RHOCP08134 193 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 YBEYP58557 167 aaPredicted RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 RPS24P62847 133 aaKnown RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 ZNF33AQ06730 810 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 GALNT2Q10471 571 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 PDGFRLQ15198 375 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 PPP1R7Q15435 360 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 ALFQ53S48 1182 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 SLC45A4Q5BKX6 768 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 HEATR6Q6AI08 1181 aaKnown RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 TIGD7Q6NT04 549 aaPredicted RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 NPNTQ6UXI9 565 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 ZNF783Q6ZMS7 281 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 ZC3H18Q86VM9 953 aaKnown RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 CIR1Q86X95 450 aaPredicted RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 ZNF354CQ86Y25 554 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 MFN1Q8IWA4 741 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 ATL2Q8NHH9 583 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 RUBCNQ92622 972 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 SLCO2A1Q92959 643 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 ATP2A3Q93084 1043 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 HLA-CQ95604 372 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 HDAC11Q96DB2 347 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 GUCD1Q96NT3 240 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 FAM118BQ9BPY3 351 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 RAB17Q9H0T7 212 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 HAUS2Q9NVX0 235 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 DUS2Q9NX74 493 aaKnown RBP13.16□□□□□ -0.3
CLK3-214ENST00000564096 EPS15L1Q9UBC2 864 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 DNPEPQ9ULA0 475 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 NR2E1Q9Y466 385 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 TRANK1O15050 2925 aa13.16□□□□□ -0.3
CLK3-214ENST00000564096 C2orf16Q68DN1 1984 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms