RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 BNIPLQ7Z465 357 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 METTL3Q86U44 580 aaKnown RBP13.81□□□□□ -0.2
CLK3-213ENST00000563842 VPS36Q86VN1 386 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 KIAA2013Q8IYS2 634 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 MCOLN2Q8IZK6 566 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 EMC1Q8N766 993 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 CYB5D2Q8WUJ1 264 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 SYN2Q92777 582 aaPredicted RBP13.81□□□□□ -0.2
CLK3-213ENST00000563842 MRGPRX1Q96LB2 322 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 TMEM245Q9H330 911 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 HAUS4Q9H6D7 363 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 PRDM16Q9HAZ2 1276 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 CD248Q9HCU0 757 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 IFNKQ9P0W0 207 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 CALCOCO1Q9P1Z2 691 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 USP18Q9UMW8 372 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 INVSQ9Y283 1065 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.81□□□□□ -0.22e-9■□□□□ 8.2
CLK3-213ENST00000563842 TNRC6BQ9UPQ9 1833 aaKnown RBP13.8□□□□□ -0.2
CLK3-213ENST00000563842 NYNRINQ9P2P1 1898 aaKnown RBP13.8□□□□□ -0.2
CLK3-213ENST00000563842 DCLK1O15075 740 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 AP5Z1O43299 807 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 ACADMP11310 421 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 SDHBP21912 280 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 PRKCHP24723 683 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 DPP6P42658 865 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 PLK1P53350 603 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 ZBED6P86452 979 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 ECT2LQ008S8 904 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 LMNB2Q03252 620 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 SPEM2Q0P670 501 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 CAMK2GQ13555 558 aaPredicted RBP13.8□□□□□ -0.2
CLK3-213ENST00000563842 CSRP2Q16527 193 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 CDO1Q16878 200 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 MAP7D1Q3KQU3 841 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 PLEKHG6Q3KR16 790 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 CCDC14Q49A88 953 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 FSCBQ5H9T9 825 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 TRNP1Q6NT89 227 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 DCUN1D2Q6PH85 259 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 KIAA1324Q6UXG2 1013 aaKnown RBP13.8□□□□□ -0.2
CLK3-213ENST00000563842 PHLDB2Q86SQ0 1253 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 FAM131BQ86XD5 332 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 TMPRSS6Q8IU80 811 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 OR2T3Q8NH03 318 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 JOSD2Q8TAC2 188 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 RLN3Q8WXF3 142 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 PRCCQ92733 491 aaPredicted RBP13.8□□□□□ -0.2
CLK3-213ENST00000563842 IGSF8Q969P0 613 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 TRIM11Q96F44 468 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 SIPA1Q96FS4 1042 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 SYT11Q9BT88 431 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 ADAM33Q9BZ11 813 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 RETREG1Q9H6L5 497 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 CAPN11Q9UMQ6 739 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 LUC7L2Q9Y383 392 aaKnown RBP13.8□□□□□ -0.2
CLK3-213ENST00000563842 PKD1L2Q7Z442 2459 aa13.8□□□□□ -0.2
CLK3-213ENST00000563842 DRGXA6NNA5 263 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 PRR5-ARHGAP8B1AHC4 643 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 OXTRP30559 389 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 RFC1P35251 1148 aaPredicted RBP13.79□□□□□ -0.2
CLK3-213ENST00000563842 ARHGAP8P85298 464 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 SFSWAPQ12872 951 aaKnown RBP13.79□□□□□ -0.2
CLK3-213ENST00000563842 PTPRNQ16849 979 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 TDRD12Q587J7 1177 aaKnown RBP13.79□□□□□ -0.2
CLK3-213ENST00000563842 WDR59Q6PJI9 974 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 ZNF571Q7Z3V5 609 aaPredicted RBP13.79□□□□□ -0.2
CLK3-213ENST00000563842 SETD3Q86TU7 594 aaPredicted RBP13.79□□□□□ -0.2
CLK3-213ENST00000563842 CENPIQ92674 756 aaPredicted RBP13.79□□□□□ -0.2
CLK3-213ENST00000563842 ARRDC1-AS1Q9H2J1 176 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 ITM2CQ9NQX7 267 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 VPS45Q9NRW7 570 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 SEMA4GQ9NTN9 838 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 PARVAQ9NVD7 372 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 INTS6Q9UL03 887 aaKnown RBP13.79□□□□□ -0.2
CLK3-213ENST00000563842 ERVW-1Q9UQF0 538 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 TBC1D30Q9Y2I9 924 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 CHD5Q8TDI0 1954 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 ITIH6Q6UXX5 1313 aa13.79□□□□□ -0.2
CLK3-213ENST00000563842 IGLV3-10A0A075B6K4 115 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 BCLAF3A2AJT9 711 aaKnown RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 TARSL2A2RTX5 802 aaKnown RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 TMCO5BA8MYB1 307 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 E9PAM4 449 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 RNASEH1O60930 286 aaKnown RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 RTN2O75298 545 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 NDUFS2O75306 463 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 SERPING1P05155 500 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 TPM1P09493 284 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 ZNF806P0C7X5 589 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 HLA-EP13747 358 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 BCKDHBP21953 392 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 ADRA1BP35368 520 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 DHPSP49366 369 aaPredicted RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 VASPP50552 380 aaPredicted RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 ZNF143P52747 638 aaPredicted RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 ATXN1P54253 815 aaKnown RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 NRG1Q02297 640 aaPredicted RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 RPL6Q02878 288 aaKnown RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 CREB5Q02930 508 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms