RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 OTOL1A6NHN0 477 aaPredicted RBP17.07■□□□□ 0.32
VPS4A-202ENST00000562754 WASH4PA8MWX3 477 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 CES2O00748 559 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 DAPK3O43293 454 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 NFATC1O95644 943 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 DYNLT1P63172 113 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 KLF1Q13351 362 aaPredicted RBP17.07■□□□□ 0.32
VPS4A-202ENST00000562754 NCBP2-AS2Q69YL0 99 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 BBS12Q6ZW61 710 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 CHST9Q7L1S5 443 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 SLC13A5Q86YT5 568 aaPredicted RBP17.07■□□□□ 0.32
VPS4A-202ENST00000562754 ADHFE1Q8IWW8 467 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 PLD5Q8N7P1 536 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 WFDC5Q8TCV5 224 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 DDI1Q8WTU0 396 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 ATP2A3Q93084 1043 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 BBS2Q9BXC9 721 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 KLC2Q9H0B6 622 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 CATSPERBQ9H7T0 1116 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 IGSF9Q9P2J2 1179 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 CLEC4EQ9ULY5 219 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 EFR3BQ9Y2G0 817 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 TCF20Q9UGU0 1960 aaKnown RBP17.06■□□□□ 0.32
VPS4A-202ENST00000562754 NYNRINQ9P2P1 1898 aaKnown RBP17.06■□□□□ 0.32
VPS4A-202ENST00000562754 NEDD8-MDP1E9PL57 170 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 APOL1O14791 398 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 HOXC11O43248 304 aaPredicted RBP17.06■□□□□ 0.32
VPS4A-202ENST00000562754 MFSD11O43934 449 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 CST8O60676 142 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 LUC7L3O95232 432 aaKnown RBP17.06■□□□□ 0.32
VPS4A-202ENST00000562754 ADH1CP00326 375 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 CYBBP04839 570 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 ADH5P11766 374 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 CETN2P41208 172 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 CDH4P55283 916 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 MPP7Q5T2T1 576 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 SLC44A3Q8N4M1 653 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 NETO2Q8NC67 525 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 OR52K2Q8NGK3 314 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 KIF18AQ8NI77 898 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.06■□□□□ 0.32
VPS4A-202ENST00000562754 NXPE3Q969Y0 559 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 NOL6Q9H6R4 1146 aaKnown RBP17.06■□□□□ 0.32
VPS4A-202ENST00000562754 ECT2Q9H8V3 914 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 GTSE1Q9NYZ3 720 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 PRKAG3Q9UGI9 489 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 NUP205Q92621 2012 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 MIA3Q5JRA6 1907 aa17.06■□□□□ 0.32
VPS4A-202ENST00000562754 TYW5A2RUC4 315 aaKnown RBP17.05■□□□□ 0.32
VPS4A-202ENST00000562754 CLDN11O75508 207 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 FGGP02679 453 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 TYRP14679 529 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 PECAM1P16284 738 aaPredicted RBP17.05■□□□□ 0.32
VPS4A-202ENST00000562754 GBE1Q04446 702 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 RUNX3Q13761 415 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 TFDP2Q14188 446 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 PAFAH1B3Q15102 231 aaKnown RBP17.05■□□□□ 0.32
VPS4A-202ENST00000562754 SIX1Q15475 284 aaPredicted RBP17.05■□□□□ 0.32
VPS4A-202ENST00000562754 ANO4Q32M45 955 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 CXorf57Q6NSI4 855 aaKnown RBP17.05■□□□□ 0.32
VPS4A-202ENST00000562754 TMCO3Q6UWJ1 677 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 NPNTQ6UXI9 565 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 ADAT2Q7Z6V5 191 aaKnown RBP17.05■□□□□ 0.32
VPS4A-202ENST00000562754 CREG2Q8IUH2 290 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 TP53INP2Q8IXH6 220 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 CARNMT1Q8N4J0 409 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 CPA6Q8N4T0 437 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 TTC8Q8TAM2 541 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 CAPZA3Q96KX2 299 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 MAK16Q9BXY0 300 aaKnown RBP17.05■□□□□ 0.32
VPS4A-202ENST00000562754 BRD9Q9H8M2 597 aa17.05■□□□□ 0.32
VPS4A-202ENST00000562754 TTC7AQ9ULT0 858 aaPredicted RBP17.05■□□□□ 0.32
VPS4A-202ENST00000562754 C19orf67A6NJJ6 358 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 PGRMC1O00264 195 aaKnown RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 PDE2AO00408 941 aaPredicted RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 CACNG3O60359 315 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 URI1O94763 535 aaPredicted RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 MAPKAPK2P49137 400 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 GAD2Q05329 585 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 SLC10A2Q12908 348 aaPredicted RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 FSCBQ5H9T9 825 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 AFMIDQ63HM1 303 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 ASTLQ6HA08 431 aaPredicted RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 C12orf40Q86WS4 652 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 MFN1Q8IWA4 741 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 ARHGAP12Q8IWW6 846 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 ACTRT1Q8TDG2 376 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 ATXN2LQ8WWM7 1075 aaKnown RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 HAUS1Q96CS2 278 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 CHFRQ96EP1 664 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 CELF6Q96J87 481 aaKnown RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 RETREG1Q9H6L5 497 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 PRDM16Q9HAZ2 1276 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 SAE1Q9UBE0 346 aaPredicted RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 TBC1D30Q9Y2I9 924 aa17.04■□□□□ 0.32
VPS4A-202ENST00000562754 R3HDM2Q9Y2K5 976 aaKnown RBP17.04■□□□□ 0.32
VPS4A-202ENST00000562754 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.03■□□□□ 0.32
VPS4A-202ENST00000562754 NARSO43776 548 aaKnown RBP17.03■□□□□ 0.32
VPS4A-202ENST00000562754 TJP3O95049 919 aa17.03■□□□□ 0.32
VPS4A-202ENST00000562754 MAP3K6O95382 1288 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms