RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 TRIM62Q9BVG3 475 aa13.44□□□□□ -0.26
SF3B3-202ENST00000562722 INTS6Q9UL03 887 aaKnown RBP13.44□□□□□ -0.26
SF3B3-202ENST00000562722 NUMA1Q14980 2115 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 TARSL2A2RTX5 802 aaKnown RBP13.43□□□□□ -0.26
SF3B3-202ENST00000562722 TRABD2BA6NFA1 517 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 P4HA2O15460 535 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 IL1BP01584 269 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 FYNP06241 537 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 NNMTP40261 264 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 PPP1R2P41236 205 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 ACADSBP45954 432 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 ATRXP46100 2492 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 GCNT1Q02742 428 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 SLC45A4Q5BKX6 768 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 ZC3H12AQ5D1E8 599 aaKnown RBP13.43□□□□□ -0.26
SF3B3-202ENST00000562722 C9orf64Q5T6V5 341 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 DENND1BQ6P3S1 775 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 SND1Q7KZF4 910 aaKnown RBP eCLIP13.43□□□□□ -0.26
SF3B3-202ENST00000562722 KDM1BQ8NB78 822 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 OR14C36Q8NHC7 312 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 LRIG1Q96JA1 1093 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 RPL10LQ96L21 214 aaKnown RBP13.43□□□□□ -0.26
SF3B3-202ENST00000562722 ELF4Q99607 663 aaPredicted RBP13.43□□□□□ -0.26
SF3B3-202ENST00000562722 ORAI3Q9BRQ5 295 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 GDF3Q9NR23 364 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 XPO7Q9UIA9 1087 aaKnown RBP13.43□□□□□ -0.26
SF3B3-202ENST00000562722 SLCO3A1Q9UIG8 710 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 FZD4Q9ULV1 537 aa13.43□□□□□ -0.26
SF3B3-202ENST00000562722 SYNJ2BP-COX16A0A087WUM0 186 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 A0A1B0GTQ1 180 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 BICDL2A1A5D9 508 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 F5H5T6 163 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 PMM2O15305 246 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 MED7O43513 233 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 DKK1O94907 266 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 ADH1BP00325 375 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 CD44P16070 742 aaKnown RBP13.42□□□□□ -0.26
SF3B3-202ENST00000562722 TACR2P21452 398 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 CD38P28907 300 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 GPD2P43304 727 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 STK19P49842 368 aaPredicted RBP13.42□□□□□ -0.26
SF3B3-202ENST00000562722 ARID5BQ14865 1188 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 SMAD1Q15797 465 aaKnown RBP13.42□□□□□ -0.26
SF3B3-202ENST00000562722 SYPL2Q5VXT5 272 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 APCDD1Q8J025 514 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 STK40Q8N2I9 435 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 PDCD7Q8N8D1 485 aaKnown RBP13.42□□□□□ -0.26
SF3B3-202ENST00000562722 EHBP1Q8NDI1 1231 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 LMO3Q8TAP4 145 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 SPATA20Q8TB22 786 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 NELFBQ8WX92 580 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 RNF34Q969K3 372 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 SLC39A13Q96H72 371 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 SERAC1Q96JX3 654 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 CNDP2Q96KP4 475 aaKnown RBP13.42□□□□□ -0.26
SF3B3-202ENST00000562722 BTN2A3PQ96KV6 586 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 INTS2Q9H0H0 1204 aaKnown RBP13.42□□□□□ -0.26
SF3B3-202ENST00000562722 FAM204AQ9H8W3 233 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 POPDC2Q9HBU9 364 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 COX16Q9P0S2 106 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 ADAMTS1Q9UHI8 967 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 SLC12A6Q9UHW9 1150 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 MAN1B1Q9UKM7 699 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 CTNND2Q9UQB3 1225 aa13.42□□□□□ -0.26
SF3B3-202ENST00000562722 LAMA5O15230 3695 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3DA0A087WVF3 549 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3IA0A087WXS9 549 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3EA0A087X179 549 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3KA0A087X1G2 549 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3FA6NER0 549 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 EIF4E1BA6NMX2 242 aaKnown RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3LB9A6J9 549 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 E5RJQ4 531 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 ENC1O14682 589 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 THAP12O43422 761 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 LETM1O95202 739 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 LDOC1O95751 146 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TRUB2O95900 331 aaKnown RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 AFPP02771 609 aaKnown RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 WNT1P04628 370 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3HP0C7X1 549 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 PDGFRAP16234 1089 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 GOT1P17174 413 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 C5AR1P21730 350 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 HNF1BP35680 557 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 ARRB1P49407 418 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 CCR5P51681 352 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 ADPRHP54922 357 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 KCNH2Q12809 1159 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 ELAVL3Q14576 367 aaKnown RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 RABGAP1LQ5R372 815 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3GQ6DHY5 549 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3CQ6IPX1 549 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TTI2Q6NXR4 508 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 CIR1Q86X95 450 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 TBC1D3Q8IZP1 549 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-202ENST00000562722 AADATQ8N5Z0 425 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 ATP6V0D2Q8N8Y2 350 aa13.41□□□□□ -0.26
SF3B3-202ENST00000562722 KREMEN1Q96MU8 473 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms