RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 APCDD1Q8J025 514 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 LGI2Q8N0V4 545 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 GANCQ8TET4 914 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 ZNF606Q8WXB4 792 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 DDX50Q9BQ39 737 aaKnown RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 CRACR2AQ9BSW2 395 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 SLC4A5Q9BY07 1137 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 IRX2Q9BZI1 471 aaPredicted RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 RSPH9Q9H1X1 276 aaPredicted RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 PABPC3Q9H361 631 aaKnown RBP12.05□□□□□ -0.48
USP3-220ENST00000561381 FBRSQ9HAH7 460 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 PLA2G2EQ9NZK7 142 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 ANKRD6Q9Y2G4 727 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 TMEM131Q92545 1883 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 ZZEF1O43149 2961 aa12.05□□□□□ -0.48
USP3-220ENST00000561381 WDFY3Q8IZQ1 3526 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 A0A1W2PP55 124 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 BECN2A8MW95 431 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 CAPN9O14815 690 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 MID1O15344 667 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 THAP12O43422 761 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 LUC7L3O95232 432 aaKnown RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 GNA14O95837 355 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 IGHV4-34P06331 123 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 ATXN1LP0C7T5 689 aaKnown RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 CD27P26842 260 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 ACADSBP45954 432 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 ST8SIA6P61647 398 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 SCAPQ12770 1279 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 HNRNPA1L2Q32P51 320 aaKnown RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 TTC31Q49AM3 519 aaPredicted RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 C9orf64Q5T6V5 341 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 RAP1GAP2Q684P5 730 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 DBX2Q6ZNG2 339 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 TMEM110Q86TL2 294 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 CIR1Q86X95 450 aaPredicted RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 MARCH9Q86YJ5 346 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 MMAAQ8IVH4 418 aaKnown RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 BAHD1Q8TBE0 780 aaPredicted RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 RPL10LQ96L21 214 aaKnown RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 NEUROG2Q9H2A3 272 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 SGK2Q9HBY8 427 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 TOR4AQ9NXH8 423 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 FBXL12Q9NXK8 326 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 SLCO3A1Q9UIG8 710 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 ERVW-1Q9UQF0 538 aa12.04□□□□□ -0.48
USP3-220ENST00000561381 APOBEC2Q9Y235 224 aaKnown RBP12.04□□□□□ -0.48
USP3-220ENST00000561381 FAM208BQ5VWN6 2430 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 TYW5A2RUC4 315 aaKnown RBP12.03□□□□□ -0.48
USP3-220ENST00000561381 GOLGA8CPA6NN73 597 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 H0Y8X5 98 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 SART1O43290 800 aaKnown RBP12.03□□□□□ -0.48
USP3-220ENST00000561381 TRUB2O95900 331 aaKnown RBP12.03□□□□□ -0.48
USP3-220ENST00000561381 IGLV3-25P01717 112 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 APOEP02649 317 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 ASLP04424 464 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 SLC9A1P19634 815 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 TACR2P21452 398 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 GNA15P30679 374 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 GRIA4P48058 902 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 STK19P49842 368 aaPredicted RBP12.03□□□□□ -0.48
USP3-220ENST00000561381 GALCP54803 685 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 IL9RQ01113 521 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 TEAD4Q15561 434 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 CST6Q15828 149 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 KIAA0895LQ68EN5 471 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 NCEH1Q6PIU2 408 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 CCNI2Q6ZMN8 369 aaPredicted RBP12.03□□□□□ -0.48
USP3-220ENST00000561381 USP30Q70CQ3 517 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 BEND5Q7L4P6 421 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 CHSY1Q86X52 802 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 CREBRFQ8IUR6 639 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 ZNF557Q8N988 423 aaPredicted RBP12.03□□□□□ -0.48
USP3-220ENST00000561381 RHBDD1Q8TEB9 315 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 STK32AQ8WU08 396 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 SLC6A18Q96N87 628 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 MED15Q96RN5 788 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 FAM129BQ96TA1 746 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 EBF2Q9HAK2 575 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 POPDC2Q9HBU9 364 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 OSGEPQ9NPF4 335 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 KIAA1522Q9P206 1035 aaPredicted RBP12.03□□□□□ -0.48
USP3-220ENST00000561381 PCDHGB2Q9Y5G2 931 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 PTPRBP23467 1997 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 DMXL2Q8TDJ6 3036 aa12.03□□□□□ -0.48
USP3-220ENST00000561381 PLXNA2O75051 1894 aa12.02□□□□□ -0.48
USP3-220ENST00000561381 SYNJ2BP-COX16A0A087WUM0 186 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 WNT9AO14904 365 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 FLRT2O43155 660 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 MED7O43513 233 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 RNASEH2AO75792 299 aaKnown RBP12.02□□□□□ -0.49
USP3-220ENST00000561381 SRPRAP08240 638 aaKnown RBP12.02□□□□□ -0.49
USP3-220ENST00000561381 VAV1P15498 845 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 MZF1P28698 734 aaPredicted RBP12.02□□□□□ -0.49
USP3-220ENST00000561381 USP8P40818 1118 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 PSMD8P48556 350 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 YWHAZP63104 245 aaKnown RBP12.02□□□□□ -0.49
USP3-220ENST00000561381 ECT2LQ008S8 904 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 PDCLQ13371 301 aa12.02□□□□□ -0.49
USP3-220ENST00000561381 EIF4EBP2Q13542 120 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms