RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 NSUN3Q9H649 340 aaKnown RBP5.43□□□□□ -1.54
SPG11-220ENST00000559933 FAM204AQ9H8W3 233 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 PNPLA8Q9NP80 782 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 LUC7LQ9NQ29 371 aaKnown RBP5.43□□□□□ -1.54
SPG11-220ENST00000559933 CNGB3Q9NQW8 809 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 KCND1Q9NSA2 647 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 IGSF5Q9NSI5 407 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 PIGVQ9NUD9 493 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 SMPD4Q9NXE4 827 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.43□□□□□ -1.54
SPG11-220ENST00000559933 UVRAGQ9P2Y5 699 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 DNMT3BQ9UBC3 853 aaKnown RBP5.43□□□□□ -1.54
SPG11-220ENST00000559933 DNAI1Q9UI46 699 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 STRIP2Q9ULQ0 834 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 SCML2Q9UQR0 700 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 SSX2IPQ9Y2D8 614 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 ALG6Q9Y672 507 aa5.43□□□□□ -1.54
SPG11-220ENST00000559933 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 CCDC195A0A1B0GUA6 201 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 GOLGA6L7A0A1B0GV03 622 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 SLC12A8A0AV02 714 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 FAM92AA1XBS5 289 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ZNF840PA6NDX5 716 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 H3BQ06 376 aaPredicted RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 M0QYT0 321 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 MYO1FO00160 1098 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CAPN9O14815 690 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 KIF5CO60282 957 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 TLR5O60602 858 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 PROSCO94903 275 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 RTN3O95197 1032 aaPredicted RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 PRAMEF12O95522 483 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 MOCS2O96007 188 aaPredicted RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 KRT1P04264 644 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 RHOP08100 348 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CD48P09326 243 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ZDHHC11BP0C7U3 371 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CSH1P0DML2 217 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CSH2P0DML3 217 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 MIPP30301 263 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 SDC4P31431 198 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 MATKP42679 507 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 SERPINB4P48594 390 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 IRAK1P51617 712 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 KCNQ1P51787 676 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ZNF143P52747 638 aaPredicted RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 VCPP55072 806 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 YWHAZP63104 245 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 SLC25A11Q02978 314 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 GSTM4Q03013 218 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 DEUP1Q05D60 604 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CBX2Q14781 532 aaPredicted RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 TAF12Q16514 161 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ZC3H12AQ5D1E8 599 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 EFHC1Q5JVL4 640 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 C10orf120Q5SQS8 335 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 MEI1Q5TIA1 1274 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 BTBD8Q5XKL5 378 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CC2D1AQ6P1N0 951 aaPredicted RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 SCYL2Q6P3W7 929 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ZNF662Q6ZS27 426 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CCDC149Q6ZUS6 474 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 RSRC2Q7L4I2 434 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 BNIPLQ7Z465 357 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 SLFN11Q7Z7L1 901 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 GPR65Q8IYL9 337 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ARMC10Q8N2F6 343 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CCDC33Q8N5R6 958 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ARL14EPQ8N8R7 260 aaPredicted RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 LRRN4CLQ8ND94 238 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 COG1Q8WTW3 980 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 IRGQQ8WZA9 623 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 SMG7Q92540 1137 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 CD101Q93033 1021 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 P2RY11Q96G91 374 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 VCPIP1Q96JH7 1222 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 MYRFLQ96LU7 910 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ZSWIM3Q96MP5 696 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ALS2CR12Q96Q35 445 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 NPY6RQ99463 290 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 SNRNP25Q9BV90 132 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 TTLL2Q9BWV7 592 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 TLR10Q9BXR5 811 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 RNF38Q9H0F5 515 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 LMAN2LQ9H0V9 348 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 ATXN3LQ9H3M9 355 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 FBXO44Q9H4M3 255 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 POPDC2Q9HBU9 364 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CYP4F12Q9HCS2 524 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 MRPL47Q9HD33 250 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 WDR6Q9NNW5 1121 aaKnown RBP5.42□□□□□ -1.54
SPG11-220ENST00000559933 ASAH2Q9NR71 780 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 GKN1Q9NS71 199 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.42□□□□□ -1.54
SPG11-220ENST00000559933 DDIT4Q9NX09 232 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CLDND1Q9NY35 253 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 IL37Q9NZH6 218 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 CLEC1BQ9P126 229 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 WDR35Q9P2L0 1181 aa5.42□□□□□ -1.54
SPG11-220ENST00000559933 STK39Q9UEW8 545 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms