RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 MID1O15344 667 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 KRT37O76014 449 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 MMEP08473 750 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 UCHL3P15374 230 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 ANP32AP39687 249 aaKnown RBP18.31■□□□□ 0.52
HDDC3-205ENST00000559898 AUHQ13825 339 aaKnown RBP18.31■□□□□ 0.52
HDDC3-205ENST00000559898 KRT31Q15323 416 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 HNRNPA1L2Q32P51 320 aaKnown RBP18.31■□□□□ 0.52
HDDC3-205ENST00000559898 KCNT1Q5JUK3 1230 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 SYCP2LQ5T4T6 812 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 CDKAL1Q5VV42 579 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 SLC26A9Q7LBE3 791 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 PHLDB2Q86SQ0 1253 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 XYLT1Q86Y38 959 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 ATP6V0D2Q8N8Y2 350 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 CADM4Q8NFZ8 388 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 SNX19Q92543 992 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 FOXJ1Q92949 421 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 ALG14Q96F25 216 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 FAM129BQ96TA1 746 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 ORAI3Q9BRQ5 295 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 IRX2Q9BZI1 471 aaPredicted RBP18.31■□□□□ 0.52
HDDC3-205ENST00000559898 RSPH9Q9H1X1 276 aaPredicted RBP18.31■□□□□ 0.52
HDDC3-205ENST00000559898 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.31■□□□□ 0.52
HDDC3-205ENST00000559898 VANGL2Q9ULK5 521 aa18.31■□□□□ 0.52
HDDC3-205ENST00000559898 DOCK9Q9BZ29 2069 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 ACACBO00763 2458 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 F8VZ95 297 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 PAGE1O75459 146 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 CNTN5O94779 1100 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 GJB6O95452 261 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 GLI1P08151 1106 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 CEACAM1P13688 526 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 CHRNB2P17787 502 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 OXTRP30559 389 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 CDH5P33151 784 aaPredicted RBP18.3■□□□□ 0.52
HDDC3-205ENST00000559898 CSNK1EP49674 416 aaKnown RBP18.3■□□□□ 0.52
HDDC3-205ENST00000559898 WDR45BQ5MNZ6 344 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 RBM43Q6ZSC3 357 aaKnown RBP18.3■□□□□ 0.52
HDDC3-205ENST00000559898 MMAAQ8IVH4 418 aaKnown RBP18.3■□□□□ 0.52
HDDC3-205ENST00000559898 STK40Q8N2I9 435 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 CPA5Q8WXQ8 436 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 PTPRN2Q92932 1015 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 RNF34Q969K3 372 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 BIRC7Q96CA5 298 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 TBCBQ99426 244 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 NPY6RQ99463 290 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 SIK2Q9H0K1 926 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 EBF2Q9HAK2 575 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 FANCLQ9NW38 375 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 KIAA1522Q9P206 1035 aaPredicted RBP18.3■□□□□ 0.52
HDDC3-205ENST00000559898 ANGPTL2Q9UKU9 493 aa18.3■□□□□ 0.52
HDDC3-205ENST00000559898 KMT2BQ9UMN6 2715 aaPredicted RBP18.3■□□□□ 0.52
HDDC3-205ENST00000559898 A0A1B0GTW7 788 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 A0A1B0GVT2 93 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 A0A1W2PP55 124 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 TYW5A2RUC4 315 aaKnown RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 GOLGA8SH3BPF8 625 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 KCNK3O14649 394 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 SH3BP5O60239 455 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 OPHN1O60890 802 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 GFPT2O94808 682 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 SEMA4FO95754 770 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 CCR1P32246 355 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 NOS2P35228 1153 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 FLT3P36888 993 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 DPP6P42658 865 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ATXN3P54252 364 aaPredicted RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ECT2LQ008S8 904 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ALFQ53S48 1182 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ZNF776Q68DI1 518 aaPredicted RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ZNF683Q8IZ20 524 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ZNF397Q8NF99 534 aaPredicted RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ENOX1Q8TC92 643 aaKnown RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 EPS8L1Q8TE68 723 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 RPRD1AQ96P16 312 aaPredicted RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 TRIM62Q9BVG3 475 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 PABPC3Q9H361 631 aaKnown RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 SYNCQ9H7C4 482 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 DNAAF2Q9NVR5 837 aaKnown RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 SUN2Q9UH99 717 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 DACH1Q9UI36 760 aa18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.29■□□□□ 0.52
HDDC3-205ENST00000559898 ITIH6Q6UXX5 1313 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 FAM47DPA6NHR8 397 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 RNF103O00237 685 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 WNT9AO14904 365 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 BCAT2O15382 392 aaPredicted RBP18.28■□□□□ 0.52
HDDC3-205ENST00000559898 FSBPO95073 299 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 DNTTP04053 509 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 ASLP04424 464 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 IGHV4-34P06331 123 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 ABCB4P21439 1286 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 MATKP42679 507 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 GABRB2P47870 512 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 PSMD8P48556 350 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 SULT1E1P49888 294 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 SHC2P98077 582 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 NAA35Q5VZE5 725 aa18.28■□□□□ 0.52
HDDC3-205ENST00000559898 AADATQ8N5Z0 425 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms