RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 RNF225M0QZC1 329 aaPredicted RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 MID1O15344 667 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 MAGEC1O60732 1142 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 LUC7L3O95232 432 aaKnown RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 ADH1BP00325 375 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3HP0C7X1 549 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 GOT1P17174 413 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 BRD2P25440 801 aaKnown RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 PMS1P54277 932 aaKnown RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 IL9RQ01113 521 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 SULT2A1Q06520 285 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 CAMK2BQ13554 666 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 SLC12A1Q13621 1099 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 SOWAHCQ53LP3 525 aaPredicted RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 DCAF6Q58WW2 860 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 KCNT1Q5JUK3 1230 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3GQ6DHY5 549 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 NADSYN1Q6IA69 706 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3CQ6IPX1 549 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 DHRS13Q6UX07 377 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 LAYNQ6UX15 382 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 SND1Q7KZF4 910 aaKnown RBP eCLIP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3Q8IZP1 549 aaPredicted RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 LGI2Q8N0V4 545 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 FMR1NBQ8N0W7 255 aaPredicted RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 CFAP52Q8N1V2 620 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 OR14C36Q8NHC7 312 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 DQX1Q8TE96 717 aaKnown RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 STK32AQ8WU08 396 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 MYO19Q96H55 970 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 SLC39A13Q96H72 371 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 LRIG1Q96JA1 1093 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 CNDP2Q96KP4 475 aaKnown RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 FCRL2Q96LA5 508 aaPredicted RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 MRGPRX3Q96LB0 322 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 MED15Q96RN5 788 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 ST7Q9NRC1 585 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 INTS6Q9UL03 887 aaKnown RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 NAALADL1Q9UQQ1 740 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 FRYQ5TBA9 3013 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 A0A087WV48 116 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 TRIM49BA6NDI0 452 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 TTC34A8MYJ7 566 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 ENC1O14682 589 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 MED7O43513 233 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 MOCS2O96007 188 aaPredicted RBP9.48□□□□□ -0.89
HDDC3-204ENST00000559834 IL1BP01584 269 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 FYNP06241 537 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 SLC2A3P11169 496 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 NUDT1P36639 197 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 GPD2P43304 727 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 YWHAZP63104 245 aaKnown RBP9.48□□□□□ -0.89
HDDC3-204ENST00000559834 GCNT1Q02742 428 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 MTA1Q13330 715 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 ELAVL3Q14576 367 aaKnown RBP9.48□□□□□ -0.89
HDDC3-204ENST00000559834 FSCBQ5H9T9 825 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 PRAMEF14Q5SWL7 426 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 C6orf118Q5T5N4 469 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 FAM46CQ5VWP2 391 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 RRAGAQ7L523 313 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 DSG4Q86SJ6 1040 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 PRPF39Q86UA1 669 aaKnown RBP9.48□□□□□ -0.89
HDDC3-204ENST00000559834 MARCH9Q86YJ5 346 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 GATAD2AQ86YP4 633 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 OXR1Q8N573 874 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 ATP6V0D2Q8N8Y2 350 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 EHBP1Q8NDI1 1231 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 SPATA20Q8TB22 786 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 CLEC4CQ8WTT0 213 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 SERAC1Q96JX3 654 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 BTN2A3PQ96KV6 586 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 PRICKLE1Q96MT3 831 aaPredicted RBP9.48□□□□□ -0.89
HDDC3-204ENST00000559834 TIGD1Q96MW7 591 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 SLC6A18Q96N87 628 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 FAM129BQ96TA1 746 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 ZSWIM1Q9BR11 485 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 NUCKS1Q9H1E3 243 aaKnown RBP9.48□□□□□ -0.89
HDDC3-204ENST00000559834 KDM4CQ9H3R0 1056 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 ERVMER34-1Q9H9K5 563 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 GDPD2Q9HCC8 539 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.48□□□□□ -0.89
HDDC3-204ENST00000559834 SERGEFQ9UGK8 458 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 SLCO3A1Q9UIG8 710 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 ITIH6Q6UXX5 1313 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 ASXL3Q9C0F0 2248 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 PTPRBP23467 1997 aa9.48□□□□□ -0.89
HDDC3-204ENST00000559834 BICDL2A1A5D9 508 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 F5H5T6 163 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 TLR4O00206 839 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 SLC7A4O43246 635 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 RFPL3O75679 317 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 GNA14O95837 355 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 WNT1P04628 370 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 KRT5P13647 590 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 TACR2P21452 398 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 CTSOP43234 321 aaPredicted RBP9.47□□□□□ -0.89
HDDC3-204ENST00000559834 RXRGP48443 463 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 PSMD8P48556 350 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 RPL34P49207 117 aaKnown RBP9.47□□□□□ -0.89
HDDC3-204ENST00000559834 PLK1P53350 603 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms