RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 RETREG1Q9H6L5 497 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 PRDM16Q9HAZ2 1276 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 MRPL47Q9HD33 250 aaKnown RBP4.51□□□□□ -1.69
SNX1-205ENST00000559339 METTL5Q9NRN9 209 aaKnown RBP4.51□□□□□ -1.69
SNX1-205ENST00000559339 VPS45Q9NRW7 570 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 SEMA4GQ9NTN9 838 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 PIGVQ9NUD9 493 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 PARVAQ9NVD7 372 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 POLR3BQ9NW08 1133 aaPredicted RBP4.51□□□□□ -1.69
SNX1-205ENST00000559339 ZNHIT6Q9NWK9 470 aaKnown RBP4.51□□□□□ -1.69
SNX1-205ENST00000559339 ARHGEF38Q9NXL2 777 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 DONSONQ9NYP3 566 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 AIPL1Q9NZN9 384 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 CALCOCO1Q9P1Z2 691 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 OR12D3Q9UGF7 316 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 XPO7Q9UIA9 1087 aaKnown RBP4.51□□□□□ -1.69
SNX1-205ENST00000559339 TMEM59LQ9UK28 342 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 VPS28Q9UK41 221 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 CDV3Q9UKY7 258 aaKnown RBP4.51□□□□□ -1.69
SNX1-205ENST00000559339 VANGL2Q9ULK5 521 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 CLEC4EQ9ULY5 219 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 SCML1Q9UN30 329 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 INVSQ9Y283 1065 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 NCKAP1Q9Y2A7 1128 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 LUC7L2Q9Y383 392 aaKnown RBP4.51□□□□□ -1.69
SNX1-205ENST00000559339 RAD54BQ9Y620 910 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 HS3ST4Q9Y661 456 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 GPR179Q6PRD1 2367 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 COL4A2P08572 1712 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 OBSL1O75147 1896 aa4.51□□□□□ -1.69
SNX1-205ENST00000559339 GVINP1Q7Z2Y8 2422 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 EDDM13A0A1B0GTR0 161 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 BCLAF3A2AJT9 711 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 TARSL2A2RTX5 802 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 ANTXRLA6NF34 631 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 C2CD4BA6NLJ0 364 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 SIGLEC16A6NMB1 481 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 TMCO5BA8MYB1 307 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 E9PAM4 449 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 KHNYNO15037 678 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 DCLK1O15075 740 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 RNF8O76064 485 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ENDOD1O94919 500 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ADCY5O95622 1261 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 FTLP02792 175 aaPredicted RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 SERPING1P05155 500 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 RHOCP08134 193 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 SRPRAP08240 638 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 ZNF806P0C7X5 589 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 GZMAP12544 262 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 GNSP15586 552 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 NDUFV2P19404 249 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 GPD1P21695 349 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 RRM1P23921 792 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 PRKCHP24723 683 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CD6P30203 668 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 RFC1P35251 1148 aaPredicted RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 ADRA1BP35368 520 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 HOXD12P35452 270 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CSKP41240 450 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 PTPN9P43378 593 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ID4P47928 161 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 TPMTP51580 245 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ZNF143P52747 638 aaPredicted RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 PLK1P53350 603 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ATXN3P54252 364 aaPredicted RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 AIF1P55008 147 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ZBED6P86452 979 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ZNF33AQ06730 810 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CCDC15Q0P6D6 951 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CAMK2GQ13555 558 aaPredicted RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 ENPP2Q13822 863 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 TRIM14Q14142 442 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ELAVL3Q14576 367 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 ARID5BQ14865 1188 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 NFKBIBQ15653 356 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CDO1Q16878 200 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 HNRNPA1L2Q32P51 320 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 PLEKHG6Q3KR16 790 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CCDC14Q49A88 953 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ACCSLQ4AC99 568 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 FSCBQ5H9T9 825 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 EFHC2Q5JST6 749 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 WDR45BQ5MNZ6 344 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 PMS2CLQ68D20 193 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 TMEM215Q68D42 235 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ZNF776Q68DI1 518 aaPredicted RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 RNF43Q68DV7 783 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 SPECC1LQ69YQ0 1117 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 KIAA1211LQ6NV74 962 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 RWDD4Q6NW29 188 aaKnown RBP4.5□□□□□ -1.69
SNX1-205ENST00000559339 SCYL2Q6P3W7 929 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 ZNF783Q6ZMS7 281 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 PRR23CQ6ZRP0 262 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 MON1BQ7L1V2 547 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 CYP2U1Q7Z449 544 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 IRF2BP2Q7Z5L9 587 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 SLFN11Q7Z7L1 901 aa4.5□□□□□ -1.69
SNX1-205ENST00000559339 DSG4Q86SJ6 1040 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms