RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 NOA1Q8NC60 698 aaKnown RBP17.34■□□□□ 0.37
SNX1-203ENST00000558040 ATL2Q8NHH9 583 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 UBXN4Q92575 508 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 TMA16Q96EY4 203 aaKnown RBP17.34■□□□□ 0.37
SNX1-203ENST00000558040 PRICKLE1Q96MT3 831 aaPredicted RBP17.34■□□□□ 0.37
SNX1-203ENST00000558040 FAM118BQ9BPY3 351 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 FERMT1Q9BQL6 677 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 BRD8Q9H0E9 1235 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 DNPEPQ9ULA0 475 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 ZNF148Q9UQR1 794 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 DRG1Q9Y295 367 aaKnown RBP17.34■□□□□ 0.37
SNX1-203ENST00000558040 MFHAS1Q9Y4C4 1052 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 LAMA3Q16787 3333 aa17.34■□□□□ 0.37
SNX1-203ENST00000558040 TRANK1O15050 2925 aa17.33■□□□□ 0.37
SNX1-203ENST00000558040 CFAP69A5D8W1 941 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 TRDMT1O14717 391 aaKnown RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 SCAMP3O14828 347 aaKnown RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 TSPAN3O60637 253 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 CNTN5O94779 1100 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 ECEL1O95672 775 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 ITGAVP06756 1048 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 RBP3P10745 1247 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 GBP2P32456 591 aaPredicted RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 NDST2P52849 883 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 DR1Q01658 176 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 SKIV2LQ15477 1246 aaKnown RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 HABP4Q5JVS0 413 aaKnown RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 TTC27Q6P3X3 843 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 DARS2Q6PI48 645 aaKnown RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 POTEHQ6S545 545 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 Q7L0L9 218 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 TFAP2DQ7Z6R9 452 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 ZC3H18Q86VM9 953 aaKnown RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 CCDC117Q8IWD4 279 aaPredicted RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 CFAP52Q8N1V2 620 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 UMODL1-AS1Q8N2C9 162 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 DEFB123Q8N688 67 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 NPWQ8N729 165 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 MYRIPQ8NFW9 859 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 BPIFB1Q8TDL5 484 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 SLCO2A1Q92959 643 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 OLFM3Q96PB7 478 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 POMKQ9H5K3 350 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 ZFP14Q9HCL3 533 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 AMACRQ9UHK6 382 aa17.33■□□□□ 0.36
SNX1-203ENST00000558040 USP15Q9Y4E8 981 aaPredicted RBP17.33■□□□□ 0.36
SNX1-203ENST00000558040 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 FAM187AA6NFU0 413 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 GFRA2O00451 464 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 TBL1XO60907 577 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 OR1E1P30953 314 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 IRAK1P51617 712 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 RPS24P62847 133 aaKnown RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 GALNT2Q10471 571 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 SLC10A2Q12908 348 aaPredicted RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 ZNF177Q13360 481 aaPredicted RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 OASLQ15646 514 aaKnown RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 SLC45A4Q5BKX6 768 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 MPP7Q5T2T1 576 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 C6orf118Q5T5N4 469 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 SYDE1Q6ZW31 735 aaPredicted RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 OTOP3Q7RTS5 596 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 GSTA5Q7RTV2 222 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 CIR1Q86X95 450 aaPredicted RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 LRRC49Q8IUZ0 686 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 DDI1Q8WTU0 396 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 TFB1MQ8WVM0 346 aaKnown RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 RSAD2Q8WXG1 361 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 SUSD6Q92537 303 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 MYEOVQ96EZ4 313 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 QKIQ96PU8 341 aaKnown RBP eCLIP17.32■□□□□ 0.366e-10■■□□□ 13.4
SNX1-203ENST00000558040 MYADMQ96S97 322 aa17.32■□□□□ 0.36
SNX1-203ENST00000558040 UBE2ZQ9H832 354 aaPredicted RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 THG1LQ9NWX6 298 aaKnown RBP17.32■□□□□ 0.36
SNX1-203ENST00000558040 DENND4AQ7Z401 1863 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 BCLAF3A2AJT9 711 aaKnown RBP17.31■□□□□ 0.36
SNX1-203ENST00000558040 ARHGAP42A6NI28 874 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 RAMP2O60895 175 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 MAP3K6O95382 1288 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 STIP1P31948 543 aaKnown RBP17.31■□□□□ 0.36
SNX1-203ENST00000558040 VIPR2P41587 438 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 KCNJ1P48048 391 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 IFNAR2P48551 515 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 YBEYP58557 167 aaPredicted RBP17.31■□□□□ 0.36
SNX1-203ENST00000558040 SMAD4Q13485 552 aaKnown RBP17.31■□□□□ 0.36
SNX1-203ENST00000558040 CCDC85BQ15834 202 aaPredicted RBP17.31■□□□□ 0.36
SNX1-203ENST00000558040 PARP15Q460N3 678 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 AFMIDQ63HM1 303 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 SETD3Q86TU7 594 aaPredicted RBP17.31■□□□□ 0.36
SNX1-203ENST00000558040 ATPAF2Q8N5M1 289 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 RIN3Q8TB24 985 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 OSCP1Q8WVF1 389 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 HDAC11Q96DB2 347 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 CELF6Q96J87 481 aaKnown RBP17.31■□□□□ 0.36
SNX1-203ENST00000558040 LRRC1Q9BTT6 524 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 KLC2Q9H0B6 622 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 ZNF212Q9UDV6 495 aa17.31■□□□□ 0.36
SNX1-203ENST00000558040 DOCK4Q8N1I0 1966 aa17.3■□□□□ 0.36
SNX1-203ENST00000558040 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.3■□□□□ 0.36
SNX1-203ENST00000558040 HEPACAM2A8MVW5 462 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms