RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 HCFC1R1Q9NWW0 138 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 MTMR4Q9NYA4 1195 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 HCN3Q9P1Z3 774 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 CEP72Q9P209 647 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 ZNF70Q9UC06 446 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 KLQ9UEF7 1012 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 LIMA1Q9UHB6 759 aaKnown RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 CHORDC1Q9UHD1 332 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 CCNL1Q9UK58 526 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 OSGIN2Q9Y236 505 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 ZNF711Q9Y462 761 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 KCNE2Q9Y6J6 123 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 RUSC2Q8N2Y8 1516 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CYP3A7-CYP3A51PA0A087WV96 503 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 TEX13CA0A0J9YWL9 993 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 LIPT2A6NK58 231 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 TEX22C9J3V5 150 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 RNASET2O00584 256 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CES2O00748 559 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 PRAMEF2O60811 474 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ERAL1O75616 437 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CDKL5O76039 1030 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 APOA4P06727 396 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 VDRP11473 427 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CYP4B1P13584 511 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 COX7A2P14406 83 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ACO1P21399 889 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CD72P21854 359 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 COMTP21964 271 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 PRPH2P23942 346 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CYP3A7P24462 503 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CTGFP29279 349 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 GCH1P30793 250 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 HIBADHP31937 336 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 NNMTP40261 264 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ARL1P40616 181 aaPredicted RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 EIF2DP41214 584 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 DPP6P42658 865 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CPA2P48052 419 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 PDE1AP54750 535 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 RPL7AP62424 266 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ARHGAP8P85298 464 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 EFNB1P98172 346 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 B4GALNT1Q00973 533 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ITIH3Q06033 890 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CCDC15Q0P6D6 951 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 TMEM115Q12893 351 aaPredicted RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 EPS8Q12929 822 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 STK4Q13043 487 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ALKBH1Q13686 389 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 BYSLQ13895 437 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 PLCB4Q15147 1175 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 SF3B3Q15393 1217 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 AP5B1Q2VPB7 878 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 GXYLT1Q4G148 440 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ZNF667Q5HYK9 610 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 TEDDM1Q5T9Z0 273 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ZKSCAN2Q63HK3 967 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 NAPEPLDQ6IQ20 393 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 RPUSD3Q6P087 351 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 KRT74Q7RTS7 529 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 SCN4BQ8IWT1 228 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 VPS52Q8N1B4 723 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 PLD5Q8N7P1 536 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 FRMD1Q8N878 549 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 PNPLA1Q8N8W4 532 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 RAB40AQ8WXH6 277 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 NCSTNQ92542 709 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CNOT9Q92600 299 aaKnown RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ATP2A3Q93084 1043 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 FEM1CQ96JP0 617 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 PKNOX2Q96KN3 472 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 KLHL15Q96M94 604 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 C5orf34Q96MH7 638 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 TTC14Q96N46 770 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 NPAS1Q99742 590 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 ADAM2Q99965 735 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 HTATIP2Q9BUP3 242 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 CINPQ9BW66 212 aaPredicted RBP3.39□□□□□ -1.87
TRAV28-201ENST00000557548 HDHD5Q9BXW7 423 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 USP29Q9HBJ7 922 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 MPP6Q9NZW5 540 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 MGAT4CQ9UBM8 478 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 HDAC6Q9UBN7 1215 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 DKK3Q9UBP4 350 aa3.39□□□□□ -1.87
TRAV28-201ENST00000557548 GAGE12BA1L429 117 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 GAGE12HA6NDE8 117 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 UNC119BA6NIH7 251 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 VWC2LB2RUY7 222 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 MASP2O00187 686 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 TMPRSS11DO60235 418 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 FAM20BO75063 409 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SEC14L2O76054 403 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 NDUFA10O95299 355 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 MBPP02686 304 aaPredicted RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 CHRM2P08172 466 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 NR2F1P10589 423 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 RARGP13631 454 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 IGFBP2P18065 325 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 MATN1P21941 496 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms