RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 DNA2P51530 1060 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 CDH4P55283 916 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 LMAN2Q12907 356 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 ZNF177Q13360 481 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-227ENST00000557269 PDK2Q15119 407 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 LLGL1Q15334 1064 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 GEN1Q17RS7 908 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 HS1BP3Q53T59 392 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 ZNF569Q5MCW4 686 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 ZFYVE27Q5T4F4 411 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 MEI1Q5TIA1 1274 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 TTC39BQ5VTQ0 682 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-227ENST00000557269 TMEM215Q68D42 235 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 FSTL4Q6MZW2 842 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 AADACL2Q6P093 401 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 MFSD7Q6UXD7 560 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 CHST9Q7L1S5 443 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 MFN1Q8IWA4 741 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 ZNF687Q8N1G0 1237 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 PQLC3Q8N755 202 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 PCDH19Q8TAB3 1148 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 FIBINQ8TAL6 211 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 EDAQ92838 391 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 HES6Q96HZ4 224 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 XPO6Q96QU8 1125 aaKnown RBP13.19□□□□□ -0.3
SHMT2-227ENST00000557269 P2RY13Q9BPV8 354 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 CALN1Q9BXU9 219 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 KLC2Q9H0B6 622 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 NOL6Q9H6R4 1146 aaKnown RBP13.19□□□□□ -0.3
SHMT2-227ENST00000557269 ABCB8Q9NUT2 735 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 DNAI1Q9UI46 699 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 TBC1D30Q9Y2I9 924 aa13.19□□□□□ -0.3
SHMT2-227ENST00000557269 A0A0D9SEW6 157 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 TYW5A2RUC4 315 aaKnown RBP13.18□□□□□ -0.3
SHMT2-227ENST00000557269 PRRT4C9JH25 899 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 CLDN11O75508 207 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 PDGFBP01127 241 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-227ENST00000557269 EGFP01133 1207 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 PYGMP11217 842 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 MZF1P28698 734 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-227ENST00000557269 OR1E1P30953 314 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 CSKP41240 450 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 CDKN2BP42772 138 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 DGKGP49619 791 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 STARD6P59095 220 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 ADCY2Q08462 1091 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 CDH18Q13634 790 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 TAZQ16635 292 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 ANKRD20A8PQ5CZ79 823 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 TMEM196Q5HYL7 178 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 DCAF12L1Q5VU92 463 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 GRAMD4Q6IC98 578 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 KIAA0907Q7Z7F0 614 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-227ENST00000557269 TP53INP2Q8IXH6 220 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 APCDD1Q8J025 514 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 SLC35F6Q8N357 371 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 NPWQ8N729 165 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 RTL3Q8N8U3 475 aaKnown RBP13.18□□□□□ -0.3
SHMT2-227ENST00000557269 TRIM58Q8NG06 486 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 FAM3CQ92520 227 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 FAF2Q96CS3 445 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 ALG14Q96F25 216 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 ALS2CR12Q96Q35 445 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 PNKPQ96T60 521 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 HERPUD2Q9BSE4 406 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 TLR10Q9BXR5 811 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 COL25A1Q9BXS0 654 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-227ENST00000557269 SLC2A11Q9BYW1 496 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 ARHGEF4Q9NR80 690 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 TMEM248Q9NWD8 314 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 DDX56Q9NY93 547 aaKnown RBP13.18□□□□□ -0.3
SHMT2-227ENST00000557269 DEC1Q9P2X7 70 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 INTS6Q9UL03 887 aaKnown RBP13.18□□□□□ -0.3
SHMT2-227ENST00000557269 HCN2Q9UL51 889 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 ZKSCAN5Q9Y2L8 839 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 OR51B4Q9Y5P0 310 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 KIAA1549LQ6ZVL6 1849 aa13.18□□□□□ -0.3
SHMT2-227ENST00000557269 CCDC66A2RUB6 948 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 WASH4PA8MWX3 477 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 ENC1O14682 589 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 DCLK1O15075 740 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 FANCGO15287 622 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 DAPK3O43293 454 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 ZRANB2O95218 330 aaKnown RBP eCLIP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 KAT7O95251 611 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 CHRM1P11229 460 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 KRT10P13645 584 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 HTR7P34969 479 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 ARL4AP40617 200 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 EIF2DP41214 584 aaKnown RBP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 PRKCQQ04759 706 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 SIGLEC14Q08ET2 396 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 ZNF211Q13398 564 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 FUT11Q495W5 492 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 RNF219Q5W0B1 726 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 SPOCD1Q6ZMY3 1216 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 TRIM67Q6ZTA4 783 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 ADIPOR2Q86V24 386 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 RCOR2Q8IZ40 523 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms