RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 PLEKHG6Q3KR16 790 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 TTC31Q49AM3 519 aaPredicted RBP12.22□□□□□ -0.45
VRK1-204ENST00000555351 FSCBQ5H9T9 825 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 ZNF776Q68DI1 518 aaPredicted RBP12.22□□□□□ -0.45
VRK1-204ENST00000555351 SND1Q7KZF4 910 aaKnown RBP eCLIP12.22□□□□□ -0.45
VRK1-204ENST00000555351 BNIPLQ7Z465 357 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 NOP9Q86U38 636 aaKnown RBP12.22□□□□□ -0.45
VRK1-204ENST00000555351 XYLT1Q86Y38 959 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 CCAR2Q8N163 923 aaKnown RBP12.22□□□□□ -0.45
VRK1-204ENST00000555351 CFAP52Q8N1V2 620 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 MRGPRX3Q96LB0 322 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 ERGIC2Q96RQ1 377 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 NAT10Q9H0A0 1025 aaKnown RBP12.22□□□□□ -0.45
VRK1-204ENST00000555351 SGK2Q9HBY8 427 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 OSGEPQ9NPF4 335 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 ARHGEF38Q9NXL2 777 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 NOCTQ9UK39 431 aaKnown RBP12.22□□□□□ -0.45
VRK1-204ENST00000555351 TPX2Q9ULW0 747 aaKnown RBP12.22□□□□□ -0.45
VRK1-204ENST00000555351 ERVW-1Q9UQF0 538 aa12.22□□□□□ -0.45
VRK1-204ENST00000555351 PCDH15Q96QU1 1955 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 EDDM13A0A1B0GTR0 161 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 A0A1B0GTW7 788 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 ARHGAP33O14559 1287 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 RNASEH1O60930 286 aaKnown RBP12.21□□□□□ -0.45
VRK1-204ENST00000555351 GRAP2O75791 330 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 KCNK5O95279 499 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 DNTTP04053 509 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 CYP1A1P04798 512 aaPredicted RBP12.21□□□□□ -0.45
VRK1-204ENST00000555351 CFIP05156 583 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 CEACAM1P13688 526 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 SOX5P35711 763 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 NNMTP40261 264 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 STAT1P42224 750 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 POLR2FP61218 127 aaKnown RBP12.21□□□□□ -0.45
VRK1-204ENST00000555351 SLC14A1Q13336 389 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 FAM102AQ5T9C2 384 aaPredicted RBP12.21□□□□□ -0.45
VRK1-204ENST00000555351 OTUD1Q5VV17 481 aaPredicted RBP12.21□□□□□ -0.45
VRK1-204ENST00000555351 RNF219Q5W0B1 726 aaPredicted RBP12.21□□□□□ -0.45
VRK1-204ENST00000555351 FBXL22Q6P050 247 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 RGL4Q8IZJ4 473 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 BPIFA3Q9BQP9 254 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 GPR174Q9BXC1 333 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 RETREG1Q9H6L5 497 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 WDCPQ9H6R7 721 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 FAM207AQ9NSI2 230 aaPredicted RBP12.21□□□□□ -0.45
VRK1-204ENST00000555351 PIGVQ9NUD9 493 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 DNAAF2Q9NVR5 837 aaKnown RBP12.21□□□□□ -0.45
VRK1-204ENST00000555351 ADAMTS1Q9UHI8 967 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 TMEM59LQ9UK28 342 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 TBC1D30Q9Y2I9 924 aa12.21□□□□□ -0.45
VRK1-204ENST00000555351 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.2□□□□□ -0.46
VRK1-204ENST00000555351 MEI4A8MW99 385 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 PAGE1O75459 146 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 ENDOD1O94919 500 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 MMEP08473 750 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 CDK11BP21127 795 aaKnown RBP12.2□□□□□ -0.46
VRK1-204ENST00000555351 MMP8P22894 467 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 ATXN3P54252 364 aaPredicted RBP12.2□□□□□ -0.46
VRK1-204ENST00000555351 CDH4P55283 916 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 GSCP56915 257 aaPredicted RBP12.2□□□□□ -0.46
VRK1-204ENST00000555351 DEUP1Q05D60 604 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 SEMA3BQ13214 749 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 NME3Q13232 169 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 ZNF177Q13360 481 aaPredicted RBP12.2□□□□□ -0.46
VRK1-204ENST00000555351 HNRNPDQ14103 355 aaKnown RBP12.2□□□□□ -0.46
VRK1-204ENST00000555351 NCAPHQ15003 741 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 SYCP1Q15431 976 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 C9orf64Q5T6V5 341 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 TAF3Q5VWG9 929 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 CXorf57Q6NSI4 855 aaKnown RBP12.2□□□□□ -0.46
VRK1-204ENST00000555351 DEFB119Q8N690 84 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 NEK11Q8NG66 645 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 C1orf216Q8TAB5 229 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 ALG14Q96F25 216 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 RPRD1AQ96P16 312 aaPredicted RBP12.2□□□□□ -0.46
VRK1-204ENST00000555351 SPAG5Q96R06 1193 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 HAPLN3Q96S86 360 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 BTBD1Q9H0C5 482 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 CD93Q9NPY3 652 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 FZD4Q9ULV1 537 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 NCKAP1Q9Y2A7 1128 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 HS3ST4Q9Y661 456 aa12.2□□□□□ -0.46
VRK1-204ENST00000555351 ATXN2Q99700 1313 aaKnown RBP12.19□□□□□ -0.46
VRK1-204ENST00000555351 IGLV3-10A0A075B6K4 115 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 SYNJ2BP-COX16A0A087WUM0 186 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 CXorf51AA0A1B0GTR3 108 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 DRGXA6NNA5 263 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 OPHN1O60890 802 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 SIN3BO75182 1162 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 GFPT2O94808 682 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 ADH1BP00325 375 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 CCDC172P0C7W6 258 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 PMLP29590 882 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 SULT1E1P49888 294 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 SHC2P98077 582 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 FMO1Q01740 532 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 ELAVL3Q14576 367 aaKnown RBP12.19□□□□□ -0.46
VRK1-204ENST00000555351 DCAF12L1Q5VU92 463 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 NAA35Q5VZE5 725 aa12.19□□□□□ -0.46
VRK1-204ENST00000555351 IL27RAQ6UWB1 636 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms