RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MRGPRX3Q96LB0 322 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 IRX2Q9BZI1 471 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 XPO4Q9C0E2 1151 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 MPP6Q9NZW5 540 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 SLCO3A1Q9UIG8 710 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 MYO6Q9UM54 1294 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 USP18Q9UMW8 372 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 CYP8B1Q9UNU6 501 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 PLA2G4CQ9UP65 541 aa11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 MUC22E2RYF6 1773 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-208ENST00000554165 CKAP5Q14008 2032 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 IGHV1OR15-9A0A0B4J2B8 117 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 TYW5A2RUC4 315 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 TTC34A8MYJ7 566 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 FAM72CH0Y354 149 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 MAP3K13O43283 966 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 SYNCRIPO60506 623 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 ENDOD1O94919 500 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 CAVIN2O95810 425 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 F9P00740 461 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 CALB1P05937 261 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 PTGER3P43115 390 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 HDAC4P56524 1084 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 KLHL30Q0D2K2 578 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 PLEKHG6Q3KR16 790 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 RABGAP1LQ5R372 815 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 FAM72AQ5TYM5 149 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 HGSNATQ68CP4 663 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 PMS2CLQ68D20 193 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 TCEAL6Q6IPX3 200 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 FAM72DQ6L9T8 149 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 DNAJC24Q6P3W2 148 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 LRSAM1Q6UWE0 723 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 SND1Q7KZF4 910 aaKnown RBP eCLIP11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 ARCQ7LC44 396 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 FAM72BQ86X60 149 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 TMPRSS6Q8IU80 811 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 CCDC185Q8N715 623 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 C3orf20Q8ND61 904 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 TCEAL3Q969E4 200 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 ALG14Q96F25 216 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 MCEEQ96PE7 176 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 SELENOOQ9BVL4 669 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 TRIM7Q9C029 511 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 PRSS16Q9NQE7 514 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 SEMA4GQ9NTN9 838 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 KIAA1522Q9P206 1035 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 ERVW-1Q9UQF0 538 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 OR51B4Q9Y5P0 310 aa11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-208ENST00000554165 A0A1B0GVM2 712 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 TCAF2A6NFQ2 919 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 SIGLEC16A6NMB1 481 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 E9PAM4 449 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 AP5Z1O43299 807 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 CCP110O43303 1012 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 GDF9O60383 454 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 SRGAP2O75044 1071 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 EPN2O95208 641 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 FTLP02792 175 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 GYPCP04921 128 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 ATP5BP06576 529 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 CCDC172P0C7W6 258 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 VAV1P15498 845 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 GPD1P21695 349 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 SDC4P31431 198 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 ADRA1BP35368 520 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 PRKCIP41743 596 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 DHPSP49366 369 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 GSCP56915 257 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 CREB5Q02930 508 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 CAMK2GQ13555 558 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 STARD3Q14849 445 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 ELF2Q15723 593 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 C5orf22Q49AR2 442 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 FIGNQ5HY92 759 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 PPP1R15BQ5SWA1 713 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 RNF219Q5W0B1 726 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 TFAP2DQ7Z6R9 452 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 CCDC117Q8IWD4 279 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 PYROXD2Q8N2H3 581 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 FAM172AQ8WUF8 416 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 CENPIQ92674 756 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 EDEM3Q9BZQ6 932 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 PRDM16Q9HAZ2 1276 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 RXFP3Q9NSD7 469 aa11.93□□□□□ -0.5
CCDC88C-208ENST00000554165 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 A0A0D9SEW6 157 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 BCLAF3A2AJT9 711 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 DRGXA6NNA5 263 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 PATE3B3GLJ2 98 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 NPC1O15118 1278 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 SNAP91O60641 907 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 SIN3BO75182 1162 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 RHOBTB1O94844 696 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 MPLP40238 635 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 PTPN9P43378 593 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 ECT2LQ008S8 904 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 ZNF177Q13360 481 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 MAMLD1Q13495 774 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms