RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 B2RBV5 119 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 GYG2O15488 501 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 VAPBO95292 243 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 PDHA1P08559 390 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ABHD2P08910 425 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 NMBRP28336 390 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 TUBP50607 506 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 STX3Q13277 289 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ITIH4Q14624 930 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 PDK1Q15118 436 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ARL13BQ3SXY8 428 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 TNFAIP8L3Q5GJ75 292 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 CFAP157Q5JU67 520 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 FAM171A1Q5VUB5 890 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ARHGAP17Q68EM7 881 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SLC9A4Q6AI14 798 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 C17orf99Q6UX52 265 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 IFNLR1Q8IU57 520 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 DENND6AQ8IWF6 608 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 RNF148Q8N7C7 305 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ST13P5Q8NFI4 369 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 GIMAP7Q8NHV1 300 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 GSDMBQ8TAX9 411 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 DQX1Q8TE96 717 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 CDKL2Q92772 493 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ERLEC1Q96DZ1 483 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SCLYQ96I15 445 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 FAM161BQ96MY7 647 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SMIM14Q96QK8 99 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 NDNQ99608 321 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 HNRNPABQ99729 332 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 KATNAL1Q9BW62 490 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 TBC1D10AQ9BXI6 508 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 FTHL17Q9BXU8 183 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 VRTNQ9H8Y1 702 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 RXFP1Q9HBX9 757 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 NT5MQ9NPB1 228 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 RBM22Q9NW64 420 aaKnown RBP eCLIP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SMPD4Q9NXE4 827 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 TMEM216Q9P0N5 145 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SLC2A6Q9UGQ3 507 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 MTO1Q9Y2Z2 717 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 COL1A2P08123 1366 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 MBLAC1A4D2B0 266 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 E9PBE3 544 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 FCHO1O14526 889 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 CHADO15335 359 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 KLHL41O60662 606 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SKAP2O75563 359 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 RASSF9O75901 435 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SPATA31D3P0C874 917 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 EZRP15311 586 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 DNAJB2P25686 324 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 PTPN3P26045 913 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ARL1P40616 181 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 PNPLA4P41247 253 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 TSPY1Q01534 308 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 YWHAHQ04917 246 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ENPEPQ07075 957 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 WASHC5Q12768 1159 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ITGA7Q13683 1181 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 DPYSL2Q16555 572 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ALKAL1Q6UXT8 129 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SPATA31D4Q6ZUB0 917 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 ZNF534Q76KX8 674 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 CFAP61Q8NHU2 1237 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 CD99L2Q8TCZ2 262 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 RAET1EQ8TD07 263 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 GTF3C2Q8WUA4 911 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 CASP10Q92851 521 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 APOPT1Q96IL0 206 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 TTC1Q99614 292 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 THTPAQ9BU02 230 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 FOXP3Q9BZS1 431 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 NMUR1Q9HB89 426 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 PLAC1Q9HBJ0 212 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 CHST12Q9NRB3 414 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 GTF2IRD1Q9UHL9 959 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.73□□□□□ -1.49
LIMA1-215ENST00000552823 SHROOM3Q8TF72 1996 aa5.73□□□□□ -1.49
LIMA1-215ENST00000552823 LOXHD1Q8IVV2 1947 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 OR51F1A6NGY5 319 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 MANSC4A6NHS7 340 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PPP1R12AO14974 1030 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 CHUKO15111 745 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PQBP1O60828 265 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PAGE1O75459 146 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 DDHD2O94830 711 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ZWINTO95229 277 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ANP32DO95626 131 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ARSAP15289 507 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 MPP1Q00013 466 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 BNIP1Q12981 228 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 USP10Q14694 798 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 CRYMQ14894 314 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ACAP1Q15027 740 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 CNGA3Q16281 694 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PSMD5Q16401 504 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 C10orf120Q5SQS8 335 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 OTUD1Q5VV17 481 aaPredicted RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms