RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 LTFP02788 710 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 RALBP11234 206 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 FDFT1P37268 417 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 ALDH1A3P47895 512 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 SH3BGRP55822 239 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-212ENST00000552491 IRF9Q00978 393 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 ITGA7Q13683 1181 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 PKDCCQ504Y2 493 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 NCBP2-AS2Q69YL0 99 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 EPGNQ6UW88 154 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 CDKL3Q8IVW4 592 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-212ENST00000552491 HACE1Q8IYU2 909 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 RTKN2Q8IZC4 609 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 LILRA2Q8N149 483 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 NME8Q8N427 588 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 CCDC185Q8N715 623 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 ACVR1CQ8NER5 493 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 ADAM32Q8TC27 787 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 ACMSDQ8TDX5 336 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 SEPT1Q8WYJ6 367 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 DCUN1D1Q96GG9 259 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 HPDLQ96IR7 371 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 CPB2Q96IY4 423 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 PPP1R36Q96LQ0 422 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 PRICKLE1Q96MT3 831 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-212ENST00000552491 QKIQ96PU8 341 aaKnown RBP eCLIP5.56□□□□□ -1.52
LIMA1-212ENST00000552491 CSPG4P5Q96PW8 444 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 WRNIP1Q96S55 665 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 IFT122Q9HBG6 1241 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 TMPRSS4Q9NRS4 437 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 FAM49BQ9NUQ9 324 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 SYBUQ9NX95 663 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 BARX2Q9UMQ3 279 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-212ENST00000552491 AK5Q9Y6K8 562 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 LOC285556D6RIA3 1793 aa5.56□□□□□ -1.52
LIMA1-212ENST00000552491 CITO14578 2027 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 GOLGA8QA0A0J9YX86 632 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 GOLGA8OA6NCC3 632 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 GOLGA8NF8WBI6 632 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 G3V2L1 256 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PPEF2O14830 753 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 AP1G1O43747 822 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PEX1O43933 1283 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 AMHP03971 560 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 CHRNGP07510 517 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 GOT1P17174 413 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 XRCC1P18887 633 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PMLP29590 882 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SDC4P31431 198 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SERPINB5P36952 375 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 DPP6P42658 865 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PHKA2P46019 1235 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MS4A2Q01362 244 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SLC6A3Q01959 620 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 DEUP1Q05D60 604 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 INCA1Q0VD86 236 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MXD4Q14582 209 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 DPYSL2Q16555 572 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 TMEM132AQ24JP5 1023 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SOWAHAQ2M3V2 549 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SDCCAG8Q86SQ7 713 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 ACOT1Q86TX2 421 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 NIM1KQ8IY84 436 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PQLC1Q8N2U9 271 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 RNF148Q8N7C7 305 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 C7orf31Q8N865 590 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 OPTNQ96CV9 577 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 CMTM5Q96DZ9 223 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MPP4Q96JB8 637 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 C12orf42Q96LP6 360 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MRPL45Q9BRJ2 306 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 C11orf84Q9BUA3 381 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 GCOM2Q9BZD3 368 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 WDR55Q9H6Y2 383 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 VRTNQ9H8Y1 702 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 CAB39LQ9H9S4 337 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 NDUFA13Q9P0J0 144 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 DCDC2Q9UHG0 476 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 HACL1Q9UJ83 578 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 G3BP2Q9UN86 482 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 TNFSF13BQ9Y275 285 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SSX2IPQ9Y2D8 614 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 DTNAQ9Y4J8 743 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PCDHB12Q9Y5F1 795 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 USP3Q9Y6I4 520 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 NUP205Q92621 2012 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 TNS1Q9HBL0 1735 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SMIM31A0A1B0GVY4 71 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 STX16-NPEPL1H3BU86 382 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PDLIM1O00151 329 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 AIM2O14862 343 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MFSD11O43934 449 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 USP12O75317 370 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 DGKIO75912 1065 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 CRTAMO95727 393 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 JUNP05412 331 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 CPA3P15088 417 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 GLDCP23378 1020 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 EDNRBP24530 442 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 GRK2P25098 689 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms