RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NUP93Q8N1F7 819 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 VWA5B2Q8N398 1253 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ACTL9Q8TC94 416 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 CENPTQ96BT3 561 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 FAXDC2Q96IV6 333 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 SYT15Q9BQS2 421 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 MECRQ9BV79 373 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 KCTD10Q9H3F6 313 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 UNC45AQ9H3U1 944 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PARVAQ9NVD7 372 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 WHRNQ9P202 907 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF229Q9UJW7 825 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 STXBP5LQ9Y2K9 1186 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ARID2Q68CP9 1835 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 HNRNPCL1O60812 293 aaKnown RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 EPHX1P07099 455 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 BMP4P12644 408 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 TAC1P20366 129 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 QARSP47897 775 aaKnown RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PKNOX1P55347 436 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 AP3B2Q13367 1082 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 SLC1A5Q15758 541 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 SV2CQ496J9 727 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 CCDC92Q53HC0 331 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 MFSD4BQ5TF39 518 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 CWF19L1Q69YN2 538 aaKnown RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 TTC27Q6P3X3 843 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 DENND5BQ6ZUT9 1274 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 UBE3DQ7Z6J8 389 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 TTC7BQ86TV6 843 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 C2orf69Q8N8R5 385 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 GSTCDQ8NEC7 633 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 RFWD2Q8NHY2 731 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 INPP5DQ92835 1189 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 KISS1RQ969F8 398 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PPP1R14AQ96A00 147 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM143Q96AN5 459 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 KLHDC7BQ96G42 594 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 EMILIN2Q9BXX0 1053 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 KIAA1586Q9HCI6 787 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PI4KBQ9UBF8 816 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PCDHA3Q9Y5H8 950 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 SNX13Q9Y5W8 968 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 DLL1O00548 723 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SLC16A3O15427 465 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 DCXO43602 365 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SIN3BO75182 1162 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 NUDT17P0C025 328 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 RAG1P15918 1043 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ABCG1P45844 678 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SMCPP49901 116 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PLIN5Q00G26 463 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 AP1B1Q10567 949 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ZBTB17Q13105 803 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 NKG7Q16617 165 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 WDR72Q3MJ13 1102 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SUPT20HL1Q3ZLR7 823 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 FASTKD1Q53R41 847 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 MFSD7Q6UXD7 560 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 HEATR4Q86WZ0 1026 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 IL22RA1Q8N6P7 574 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 DAGLBQ8NCG7 672 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 CHAC2Q8WUX2 184 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 OXNAD1Q96HP4 312 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 HES6Q96HZ4 224 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF341Q9BYN7 854 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SEMA6AQ9H2E6 1030 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SLC38A10Q9HBR0 1119 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 RAVER2Q9HCJ3 691 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ACSS2Q9NR19 701 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 MAN1C1Q9NR34 630 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 RBAKQ9NYW8 714 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 BTBD7Q9P203 1132 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 TMCC1O94876 653 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PGRP06401 933 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 TPBGLP0DKB5 382 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SRGAP2BP0DMP2 458 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 FOXN2P32314 431 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 GLRBP48167 497 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 NME5P56597 212 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 MRPS22P82650 360 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF460Q14592 562 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 FASTKD3Q14CZ7 662 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 EFHC1Q5JVL4 640 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ACAD10Q6JQN1 1059 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ACAD11Q709F0 780 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 TRIM74Q86UV6 250 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 TRIM73Q86UV7 250 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ERO1BQ86YB8 467 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 HACE1Q8IYU2 909 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 RCOR2Q8IZ40 523 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SDCCAG3Q96C92 435 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 RMDN3Q96TC7 470 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SMAD5Q99717 465 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 HAUS8Q9BT25 410 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 DCLK3Q9C098 648 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 KLHL4Q9C0H6 718 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SNX25Q9H3E2 840 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PALMDQ9NP74 551 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 DDX28Q9NUL7 540 aaKnown RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms