RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 HOXC11O43248 304 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 FNTAP49354 379 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 LMNB2Q03252 620 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 PDK1Q15118 436 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 EML3Q32P44 896 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 PREPLQ4J6C6 727 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 ARTNQ5T4W7 220 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 NCBP2-AS2Q69YL0 99 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 POTEHQ6S545 545 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 PRICKLE1Q96MT3 831 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 FAM83CQ9BQN1 747 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 MAGEH1Q9H213 219 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 ZNF212Q9UDV6 495 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 KIAA1549LQ6ZVL6 1849 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 SPTBN5Q9NRC6 3674 aaKnown RBP16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 KRIT1O00522 736 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 MCF2LO15068 1137 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 MTSS1O43312 755 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 LUC7L3O95232 432 aaKnown RBP16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 KRT10P13645 584 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 CHRNA3P32297 505 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 EIF2DP41214 584 aaKnown RBP16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 GAD2Q05329 585 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 MMRN1Q13201 1228 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 ZNF177Q13360 481 aaPredicted RBP16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 NOMO1Q15155 1222 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 TMCO4Q5TGY1 634 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 AFMIDQ63HM1 303 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 TANGO2Q6ICL3 276 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 PTCRAQ6ISU1 281 aaPredicted RBP16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 VITQ6UXI7 678 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 C14orf80Q86SX3 495 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 ADGRG2Q8IZP9 1017 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 CPA6Q8N4T0 437 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 DDI1Q8WTU0 396 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 NKD2Q969F2 451 aaPredicted RBP16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 IGSF8Q969P0 613 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 WBP2Q969T9 261 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 EXOC4Q96A65 974 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 MSANTD3Q96H12 275 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 OLFM3Q96PB7 478 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 LRRC19Q9H756 370 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 CDH22Q9UJ99 828 aa16.46■□□□□ 0.23
PRPF40A-212ENST00000545856 MYOFQ9NZM1 2061 aa16.46■□□□□ 0.22
PRPF40A-212ENST00000545856 CTAGE15A4D2H0 777 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 ZNF185O15231 689 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 RAMP2O60895 175 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 CTAGE8P0CG41 777 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 AMPD1P23109 780 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 OR1E1P30953 314 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 VIPR2P41587 438 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 GALNT2Q10471 571 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 CDH18Q13634 790 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 DMC1Q14565 340 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 E2F5Q15329 346 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 SIX1Q15475 284 aaPredicted RBP16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 FYB2Q5VWT5 728 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 KAZNQ674X7 775 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 C1orf228Q6PIY5 440 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 CTAGE6Q86UF2 777 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 CTAGE4Q8IX94 777 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 FIBINQ8TAL6 211 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 GRK7Q8WTQ7 553 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 DNASE1L2Q92874 299 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 HDAC11Q96DB2 347 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 CAPZA3Q96KX2 299 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 XPO6Q96QU8 1125 aaKnown RBP16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 TRMT61BQ9BVS5 477 aaKnown RBP16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 HEMGNQ9BXL5 484 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 THEGQ9P2T0 379 aa16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 DRG1Q9Y295 367 aaKnown RBP16.45■□□□□ 0.22
PRPF40A-212ENST00000545856 GOLGA6L7A0A1B0GV03 622 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 ZSCAN5CA6NGD5 496 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 ARHGAP42A6NI28 874 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 CACNG3O60359 315 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 PHF2O75151 1096 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 HOXD9P28356 352 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 DHCR24Q15392 516 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 TIGD7Q6NT04 549 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 RFWD3Q6PCD5 774 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 ANKS1BQ7Z6G8 1248 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 METTL3Q86U44 580 aaKnown RBP16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 CDKL3Q8IVW4 592 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 SUGP1Q8IWZ8 645 aaKnown RBP16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 SPATA4Q8NEY3 305 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 RIN3Q8TB24 985 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 SLC35B2Q8TB61 432 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 ACTL9Q8TC94 416 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 FGF14Q92915 247 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 SLCO2A1Q92959 643 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 RSPRY1Q96DX4 576 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 TSGA13Q96PP4 275 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 HAUS2Q9NVX0 235 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 DTLQ9NZJ0 730 aa16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 KIAA1522Q9P206 1035 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-212ENST00000545856 TBL1XO60907 577 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 CYP17A1P05093 508 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 ITGAVP06756 1048 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 168.1 ms