RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MFN1Q8IWA4 741 aa8.78□□□□□ -1
USP28-215ENST00000545608 TRIM59Q8IWR1 403 aa8.78□□□□□ -1
USP28-215ENST00000545608 ADAM32Q8TC27 787 aa8.78□□□□□ -1
USP28-215ENST00000545608 ADAMTS14Q8WXS8 1223 aa8.78□□□□□ -1
USP28-215ENST00000545608 SNX19Q92543 992 aa8.78□□□□□ -1
USP28-215ENST00000545608 GOLGA1Q92805 767 aa8.78□□□□□ -1
USP28-215ENST00000545608 TTC17Q96AE7 1141 aa8.78□□□□□ -1
USP28-215ENST00000545608 BIRC7Q96CA5 298 aa8.78□□□□□ -1
USP28-215ENST00000545608 SLC39A13Q96H72 371 aa8.78□□□□□ -1
USP28-215ENST00000545608 MRGPRX3Q96LB0 322 aa8.78□□□□□ -1
USP28-215ENST00000545608 ORAI3Q9BRQ5 295 aa8.78□□□□□ -1
USP28-215ENST00000545608 SRRTQ9BXP5 876 aaKnown RBP8.78□□□□□ -1
USP28-215ENST00000545608 IRX2Q9BZI1 471 aaPredicted RBP8.78□□□□□ -1
USP28-215ENST00000545608 BTBD1Q9H0C5 482 aa8.78□□□□□ -1
USP28-215ENST00000545608 NUCKS1Q9H1E3 243 aaKnown RBP8.78□□□□□ -1
USP28-215ENST00000545608 PCED1AQ9H1Q7 454 aa8.78□□□□□ -1
USP28-215ENST00000545608 ST7Q9NRC1 585 aa8.78□□□□□ -1
USP28-215ENST00000545608 TM7SF3Q9NS93 570 aa8.78□□□□□ -1
USP28-215ENST00000545608 CYTH4Q9UIA0 394 aa8.78□□□□□ -1
USP28-215ENST00000545608 XPO7Q9UIA9 1087 aaKnown RBP8.78□□□□□ -1
USP28-215ENST00000545608 PCOLCE2Q9UKZ9 415 aa8.78□□□□□ -1
USP28-215ENST00000545608 CNTN6Q9UQ52 1028 aa8.78□□□□□ -1
USP28-215ENST00000545608 CTNND2Q9UQB3 1225 aa8.78□□□□□ -1
USP28-215ENST00000545608 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.78□□□□□ -1
USP28-215ENST00000545608 IGF2RP11717 2491 aa8.78□□□□□ -1
USP28-215ENST00000545608 NUMA1Q14980 2115 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 PAPSS1O43252 624 aaPredicted RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 SIN3BO75182 1162 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 GADD45BO75293 160 aaPredicted RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 FSBPO95073 299 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 CER1O95813 267 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 MOCS2O96007 188 aaPredicted RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 DNTTP04053 509 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 CAPNS1P04632 268 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 ZNF883P0CG24 379 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 CSKP41240 450 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 ZBTB16Q05516 673 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 DCAF6Q58WW2 860 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 KCNT1Q5JUK3 1230 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 ZNF776Q68DI1 518 aaPredicted RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 FOXR2Q6PJQ5 311 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 IL27RAQ6UWB1 636 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 LAYNQ6UX15 382 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 GLRX5Q86SX6 157 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 TAC4Q86UU9 113 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 DHX40Q8IX18 779 aaKnown RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 CFAP52Q8N1V2 620 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 CARNMT1Q8N4J0 409 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 HJURPQ8NCD3 748 aaPredicted RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 RHBDD1Q8TEB9 315 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 SETD7Q8WTS6 366 aaKnown RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 FAM149B1Q96BN6 582 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 SERPINB11Q96P15 392 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 DDX50Q9BQ39 737 aaKnown RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 INTS2Q9H0H0 1204 aaKnown RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 RSPH9Q9H1X1 276 aaPredicted RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 FBRSQ9HAH7 460 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 TM9SF3Q9HD45 589 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 UBE2TQ9NPD8 197 aaPredicted RBP8.77□□□□□ -1.01
USP28-215ENST00000545608 ACP6Q9NPH0 428 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 SERGEFQ9UGK8 458 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 TLR6Q9Y2C9 796 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 SNX11Q9Y5W9 270 aa8.77□□□□□ -1.01
USP28-215ENST00000545608 CKAP5Q14008 2032 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 KNL1Q8NG31 2342 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 BICDL2A1A5D9 508 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 TTC34A8MYJ7 566 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 LETM1O95202 739 aaPredicted RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 GNA14O95837 355 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 AFPP02771 609 aaKnown RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 ASLP04424 464 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 IGHV4-34P06331 123 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 KRT5P13647 590 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 CD27P26842 260 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 CTSOP43234 321 aaPredicted RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 ACADSBP45954 432 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 AFF3P51826 1226 aaKnown RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 MARSP56192 900 aaKnown RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 ST8SIA6P61647 398 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 PITX1P78337 314 aaPredicted RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 SCAPQ12770 1279 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 PAK1Q13153 545 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 NNTQ13423 1086 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 BECN1Q14457 450 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 HNRNPA1L2Q32P51 320 aaKnown RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 ZC3H12AQ5D1E8 599 aaKnown RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 PITRM1Q5JRX3 1037 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 C9orf64Q5T6V5 341 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 RAP1GAP2Q684P5 730 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 GJB7Q6PEY0 223 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 CCNI2Q6ZMN8 369 aaPredicted RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 THSD4Q6ZMP0 1018 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 BEND5Q7L4P6 421 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 TMEM110Q86TL2 294 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 APCDD1Q8J025 514 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 LGI2Q8N0V4 545 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 ZNF557Q8N988 423 aaPredicted RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 BAHD1Q8TBE0 780 aaPredicted RBP8.76□□□□□ -1.01
USP28-215ENST00000545608 GANCQ8TET4 914 aa8.76□□□□□ -1.01
USP28-215ENST00000545608 STK32AQ8WU08 396 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms