RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 GALNT2Q10471 571 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 SETDB1Q15047 1291 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 ARHGAP36Q6ZRI8 547 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 SLC24A5Q71RS6 500 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 HDAC11Q96DB2 347 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 SRRDQ9UH36 339 aa16.73■□□□□ 0.27
COL4A1-204ENST00000543140 MX2P20592 715 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 ALDH3A1P30838 453 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 SERPINB6P35237 376 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 IRX4P78413 519 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 NOMO2Q5JPE7 1267 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 TRAF7Q6Q0C0 670 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 C4orf50Q6ZRC1 276 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 CASP10Q92851 521 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 KLHL29Q96CT2 875 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 MTBPQ96DY7 904 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 FCRL3Q96P31 734 aaPredicted RBP16.72■□□□□ 0.27
COL4A1-204ENST00000543140 NMUR1Q9HB89 426 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 PCDHB8Q9UN66 801 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 MYO16Q9Y6X6 1858 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 A0A0G2JND7 137 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 CCDC195A0A1B0GUA6 201 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 TNFRSF10BO14763 440 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 PAGE1O75459 146 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 CABYRO75952 493 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 AP2A1O95782 977 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 MOCS2O96007 188 aaPredicted RBP16.72■□□□□ 0.27
COL4A1-204ENST00000543140 TYMPP19971 482 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 GPR15P49685 360 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 NIPAL4Q0D2K0 466 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 DDR2Q16832 855 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 SCD5Q86SK9 330 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 CHSY1Q86X52 802 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 MLPHQ9BV36 600 aaPredicted RBP16.72■□□□□ 0.27
COL4A1-204ENST00000543140 TBC1D13Q9NVG8 400 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 RAD54BQ9Y620 910 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 FRMPD3Q5JV73 1810 aa16.72■□□□□ 0.27
COL4A1-204ENST00000543140 IRAK2O43187 625 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 TRPA1O75762 1119 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 IGLV3-25P01717 112 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 POLBP06746 335 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 TROVE2P10155 538 aaKnown RBP eCLIP16.71■□□□□ 0.27
COL4A1-204ENST00000543140 TPH1P17752 444 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 SERPINB9P50453 376 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 ELF3P78545 371 aaPredicted RBP16.71■□□□□ 0.27
COL4A1-204ENST00000543140 SLC20A2Q08357 652 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 TEX44Q53QW1 395 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 MAP3K21Q5TCX8 1036 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 PACS1Q6VY07 963 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 RASSF3Q86WH2 238 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 CEP57Q86XR8 500 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 RAET1EQ8TD07 263 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 CDKL2Q92772 493 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 ABCC13Q9NSE7 274 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 VANGL2Q9ULK5 521 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 PATJQ8NI35 1801 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 A0A1W2PQH9 124 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 ARHGAP42A6NI28 874 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 ATP9BO43861 1147 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 GRK4P32298 578 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 CCNFP41002 786 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 NOGQ13253 232 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 CERCAMQ5T4B2 595 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 MARK2Q7KZI7 788 aaKnown RBP16.71■□□□□ 0.27
COL4A1-204ENST00000543140 NLRP9Q7RTR0 991 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 OTOP3Q7RTS5 596 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 GPR152Q8TDT2 470 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 B3GALT6Q96L58 329 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 GBA3Q9H227 469 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 ZFATQ9P243 1243 aa16.71■□□□□ 0.27
COL4A1-204ENST00000543140 EOMESO95936 686 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 DSC1Q08554 894 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 CCDC15Q0P6D6 951 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 CYS1Q717R9 158 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 PARP9Q8IXQ6 854 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 COLGALT2Q8IYK4 626 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 SCML4Q8N228 414 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 ZNF669Q96BR6 464 aaPredicted RBP16.7■□□□□ 0.26
COL4A1-204ENST00000543140 FCRL2Q96LA5 508 aaPredicted RBP16.7■□□□□ 0.26
COL4A1-204ENST00000543140 TRIM55Q9BYV6 548 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 OSBPL2Q9H1P3 480 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 ZNF395Q9H8N7 513 aaPredicted RBP16.7■□□□□ 0.26
COL4A1-204ENST00000543140 OSER1Q9NX31 292 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 ARHGEF38Q9NXL2 777 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 KANSL3Q9P2N6 904 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 SQORQ9Y6N5 450 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 NUMBLQ9Y6R0 609 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 ARHGEF37A1IGU5 675 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 CCDC78A2IDD5 438 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 C2orf71A6NGG8 1288 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 DCTN3O75935 186 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 ALDOAP04075 364 aaKnown RBP16.7■□□□□ 0.26
COL4A1-204ENST00000543140 TARSP26639 723 aaKnown RBP16.7■□□□□ 0.26
COL4A1-204ENST00000543140 EIF4EBP2Q13542 120 aaPredicted RBP16.7■□□□□ 0.26
COL4A1-204ENST00000543140 MTDHQ86UE4 582 aaKnown RBP16.7■□□□□ 0.26
COL4A1-204ENST00000543140 CCNJLQ8IV13 435 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 URGCPQ8TCY9 931 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 ATXN7L3BQ96GX2 97 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 FAM193BQ96PV7 902 aaPredicted RBP16.7■□□□□ 0.26
COL4A1-204ENST00000543140 NAT9Q9BTE0 207 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms