RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 PASD1Q8IV76 773 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 YAF2Q8IY57 180 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 THEM5Q8N1Q8 247 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 DEFB119Q8N690 84 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 ANKRD52Q8NB46 1076 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 SMG8Q8ND04 991 aaKnown RBP8.69□□□□□ -1.02
CHD4-208ENST00000540960 SLCO2A1Q92959 643 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 CAVIN3Q969G5 261 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 MAGOHBQ96A72 148 aaKnown RBP8.69□□□□□ -1.02
CHD4-208ENST00000540960 WBP1Q96G27 269 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 RUFY1Q96T51 708 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 TBCBQ99426 244 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 CNPY3Q9BT09 278 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 LRRC1Q9BTT6 524 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 OXCT2Q9BYC2 517 aaPredicted RBP8.69□□□□□ -1.02
CHD4-208ENST00000540960 FOXP3Q9BZS1 431 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 UBXN6Q9BZV1 441 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 SMYD3Q9H7B4 428 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 TRPV4Q9HBA0 871 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 CAPN10Q9HC96 672 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 GDF3Q9NR23 364 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 MTRF1LQ9UGC7 380 aaKnown RBP8.69□□□□□ -1.02
CHD4-208ENST00000540960 PCYOX1Q9UHG3 505 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 SLC6A14Q9UN76 642 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 L1RE1Q9UN81 338 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 CABIN1Q9Y6J0 2220 aa8.69□□□□□ -1.02
CHD4-208ENST00000540960 OTOL1A6NHN0 477 aaPredicted RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 ZNF487B1APH4 448 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 SMAPO00193 183 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 FBXO21O94952 628 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 HEXIM1O94992 359 aaKnown RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 ODC1P11926 461 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 IGFBP6P24592 240 aaPredicted RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 PSMA2P25787 234 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 MLH1P40692 756 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 GPD2P43304 727 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 TNNT3P45378 269 aaPredicted RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 ZNF143P52747 638 aaPredicted RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 LILRA4P59901 499 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 VSNL1P62760 191 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 NFKB2Q00653 900 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 TFDP2Q14188 446 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 NAA30Q147X3 362 aaPredicted RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 TEAD2Q15562 447 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 CCNG2Q16589 344 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 EFHC1Q5JVL4 640 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 FAM171A1Q5VUB5 890 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 DENND1BQ6P3S1 775 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 DSTYKQ6XUX3 929 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 ZNF574Q6ZN55 896 aaPredicted RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 SYT13Q7L8C5 426 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 GLRX5Q86SX6 157 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 TMEM110Q86TL2 294 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 CCDC50Q8IVM0 306 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 KLHL7Q8IXQ5 586 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 ADGRF2Q8IZF7 708 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 CNPY4Q8N129 248 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 LRRN4CLQ8ND94 238 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 RPLP0P6Q8NHW5 317 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 TFAP2BQ92481 460 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 TTC9Q92623 222 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 EZH1Q92800 747 aaPredicted RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 MS4A14Q96JA4 679 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 PPP1R10Q96QC0 940 aaKnown RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 TTPALQ9BTX7 342 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 ELOVL4Q9GZR5 314 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 LRRC19Q9H756 370 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 EPB41L5Q9HCM4 733 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 ACP6Q9NPH0 428 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 RRN3Q9NYV6 651 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 PCOLCE2Q9UKZ9 415 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 CDH9Q9ULB4 789 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 PACSIN2Q9UNF0 486 aaPredicted RBP8.68□□□□□ -1.02
CHD4-208ENST00000540960 ICE1Q9Y2F5 2266 aa8.68□□□□□ -1.02
CHD4-208ENST00000540960 LRBAP50851 2863 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 GOLGA6L10A6NI86 522 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 DPYSL4O14531 572 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 ARHGAP33O14559 1287 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 CYB561D2O14569 222 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 MAP2K7O14733 419 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 RRP8O43159 456 aaKnown RBP8.67□□□□□ -1.02
CHD4-208ENST00000540960 HSF2BPO75031 334 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 TADA2AO75478 443 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 ECEL1O95672 775 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 SERPINF2P08697 491 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 GPD1P21695 349 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 AKAP5P24588 427 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 SDC4P31431 198 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 ZNF135P52742 658 aaPredicted RBP8.67□□□□□ -1.02
CHD4-208ENST00000540960 CDH8P55286 799 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 GUCY2DQ02846 1103 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 CALCOCO2Q13137 446 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 TUSC3Q13454 348 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 SERINC3Q13530 473 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 HLTFQ14527 1009 aaKnown RBP eCLIP8.67□□□□□ -1.027e-8■□□□□ 9.3
CHD4-208ENST00000540960 CASP8Q14790 479 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 PDK2Q15119 407 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 MYLKQ15746 1914 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 DUOXA1Q1HG43 343 aa8.67□□□□□ -1.02
CHD4-208ENST00000540960 SOWAHAQ2M3V2 549 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms