RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MGAT1P26572 445 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 MAPK10P53779 464 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 CLDN10P78369 228 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 PHEXP78562 749 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF423Q2M1K9 1284 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 MGAT5BQ3V5L5 792 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 EPGNQ6UW88 154 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 Q6ZNX1 250 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 SETD3Q86TU7 594 aaPredicted RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 HACE1Q8IYU2 909 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 SLC7A3Q8WY07 619 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 KLHL32Q96NJ5 620 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 GLIS2Q9BZE0 524 aaPredicted RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 ARMC7Q9H6L4 198 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 CLK4Q9HAZ1 481 aaKnown RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 CYTH4Q9UIA0 394 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 PADI4Q9UM07 663 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 LOXHD1Q8IVV2 1947 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 VAPBO95292 243 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 RPL10P27635 214 aaKnown RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 MTX3Q5HYI7 312 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 SLC9A4Q6AI14 798 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 PGAM4Q8N0Y7 254 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 RSPH1Q8WYR4 309 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 C12orf43Q96C57 262 aaKnown RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 HAPLN2Q9GZV7 340 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 PLAC1Q9HBJ0 212 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 POLRMTO00411 1230 aaKnown RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 ZBTB11O95625 1053 aaPredicted RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 TFE3P19532 575 aaPredicted RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 ALDH1B1P30837 517 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 PPARGP37231 505 aaPredicted RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 LSM12Q3MHD2 195 aaKnown RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 PIGGQ5H8A4 983 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 METTL21CQ5VZV1 264 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 XKR5Q6UX68 686 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 TIFABQ6ZNK6 161 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 DQX1Q8TE96 717 aaKnown RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 HEXIM2Q96MH2 286 aaKnown RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 BIRC8Q96P09 236 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 CNPY3Q9BT09 278 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 PCDHAC1Q9H158 963 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 INIPQ9NRY2 104 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 TRNAU1APQ9NX07 287 aaKnown RBP13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 CDYLQ9Y232 598 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 RNF11Q9Y3C5 154 aa13.13□□□□□ -0.31
SFSWAP-209ENST00000540469 SPDYE2BA6NHP3 402 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 LSM1O15116 133 aaKnown RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 TRIM13O60858 407 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 GSRP00390 522 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 CHRNGP07510 517 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 SPDYE6P0CI01 402 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 GJA8P48165 433 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 HARS2P49590 506 aaKnown RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 RELAQ04206 551 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 STILQ15468 1287 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 SPDYE2Q495Y8 402 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 PDCD4Q53EL6 469 aaKnown RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF667Q5HYK9 610 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 GPR107Q5VW38 600 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 LRRC8EQ6NSJ5 796 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 LAYNQ6UX15 382 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 ATG14Q6ZNE5 492 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 TMEM126BQ8IUX1 230 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 MCUQ8NE86 351 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 BORCS5Q969J3 196 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 AGAP3Q96P47 875 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 CEP41Q9BYV8 373 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 SNX15Q9NRS6 342 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 PCDHGC3Q9UN70 934 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 A0A087WXM4 84 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 C7orf72A4D263 438 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 SAC3D1A6NKF1 404 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 MATN2O00339 956 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 FBP2O00757 339 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 TCF7P36402 384 aaPredicted RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 ETFBP38117 255 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 PHKA2P46019 1235 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 EIF2B2P49770 351 aaKnown RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 RGS7P49802 495 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 ENPEPQ07075 957 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 CCDC153Q494R4 210 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 PODNQ7Z5L7 613 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 CCNYL1Q8N7R7 359 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 ISOC1Q96CN7 298 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 PDCD2LQ9BRP1 358 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 NOL11Q9H8H0 719 aaKnown RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 IGSF9Q9P2J2 1179 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 CDC14AQ9UNH5 594 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 RAD17O75943 681 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 HALP42357 657 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 OXCT1P55809 520 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 SLC10A2Q12908 348 aaPredicted RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 TAZQ16635 292 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 OGFOD2Q6N063 350 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 CCDC60Q8IWA6 550 aaPredicted RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 CHERPQ8IWX8 916 aaKnown RBP13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 VPS33BQ9H267 617 aa13.12□□□□□ -0.31
SFSWAP-209ENST00000540469 RNF103-CHMP3A0A140T963 221 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 H3BNH8 94 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 533.2 ms