RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 NMRK2Q9NPI5 230 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 PIGVQ9NUD9 493 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 BCAP29Q9UHQ4 241 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 NUDT5Q9UKK9 219 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 SSX2IPQ9Y2D8 614 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 DNAJC16Q9Y2G8 782 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 PCDHB5Q9Y5E4 795 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 NR2E3Q9Y5X4 410 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 KIF13BQ9NQT8 1826 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 GOLGA8QA0A0J9YX86 632 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 GOLGA8OA6NCC3 632 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 GOLGA8NF8WBI6 632 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 GIPC1O14908 333 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 HOXD8P13378 290 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-213ENST00000540338 EFEMP1Q12805 493 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 UBXN11Q5T124 520 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 PACS1Q6VY07 963 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 ACAD11Q709F0 780 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 AGR3Q8TD06 166 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 INPP5DQ92835 1189 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 NTAN1Q96AB6 310 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 SPON2Q9BUD6 331 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 KATNBL1Q9H079 304 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 PNPLA8Q9NP80 782 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 STARD7Q9NQZ5 370 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 TRIM33Q9UPN9 1127 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 FCHO1O14526 889 aa11.02□□□□□ -0.64
CLIP1-213ENST00000540338 FGF10O15520 208 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-213ENST00000540338 APOA4P06727 396 aa11.02□□□□□ -0.64
CLIP1-213ENST00000540338 GLUD2P49448 558 aa11.02□□□□□ -0.64
CLIP1-213ENST00000540338 PKDCCQ504Y2 493 aa11.02□□□□□ -0.64
CLIP1-213ENST00000540338 TRMT10BQ6PF06 316 aaKnown RBP11.02□□□□□ -0.64
CLIP1-213ENST00000540338 HFE2Q6ZVN8 426 aa11.02□□□□□ -0.64
CLIP1-213ENST00000540338 RASAL3Q86YV0 1011 aa11.02□□□□□ -0.64
CLIP1-213ENST00000540338 KCNV2Q8TDN2 545 aa11.02□□□□□ -0.64
CLIP1-213ENST00000540338 OXNAD1Q96HP4 312 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-213ENST00000540338 ZMYND8Q9ULU4 1186 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-213ENST00000540338 TYROBPO43914 113 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 LUC7L3O95232 432 aaKnown RBP11.02□□□□□ -0.65
CLIP1-213ENST00000540338 SERPINE1P05121 402 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 ITGA2BP08514 1039 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 KCNA4P22459 653 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 ITGA7Q13683 1181 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 DNAL1Q4LDG9 190 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 TEX44Q53QW1 395 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 MAP3K21Q5TCX8 1036 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 ZNF280DQ6N043 979 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 TRNP1Q6NT89 227 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 CHSY1Q86X52 802 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 CALML6Q8TD86 181 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 EIF2B3Q9NR50 452 aaKnown RBP11.02□□□□□ -0.65
CLIP1-213ENST00000540338 TMEM51Q9NW97 253 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 ARHGEF38Q9NXL2 777 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 KCNK4Q9NYG8 393 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 FLRT1Q9NZU1 646 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 SLC12A4Q9UP95 1085 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 MPOP05164 745 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 HADHAP40939 763 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 GRIA1P42261 906 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 CPA2P48052 419 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 TBX4P57082 545 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 TBCCQ15814 346 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 ZCCHC23Q6ZST2 131 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 DQX1Q8TE96 717 aaKnown RBP11.02□□□□□ -0.65
CLIP1-213ENST00000540338 ELMO2Q96JJ3 720 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 FIS1Q9Y3D6 152 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 A0A096LPK6 155 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 NRP1O14786 923 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 BIRC5O15392 142 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 CA12O43570 354 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 CRHR1P34998 444 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 POU6F1Q14863 301 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 CCDC153Q494R4 210 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 BRMS1LQ5PSV4 323 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 RAB44Q7Z6P3 723 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-213ENST00000540338 RNF135Q8IUD6 432 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 RPRD1AQ96P16 312 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-213ENST00000540338 PGLYRP2Q96PD5 576 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 CXCL16Q9H2A7 254 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 CRTAC1Q9NQ79 661 aa11.02□□□□□ -0.65
CLIP1-213ENST00000540338 POLR2AP24928 1970 aaKnown RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 FAM237BA0A1B0GVD1 139 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 LRIG2O94898 1065 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ALDH2P05091 517 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 CCNB1P14635 433 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 IL4RP24394 825 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 SLC1A6P48664 564 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 GJA9P57773 515 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 NOMO2Q5JPE7 1267 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 C1orf146Q5VVC0 180 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 PDPK2PQ6A1A2 396 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ALKAL1Q6UXT8 129 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 RGS9BPQ6ZS82 235 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 CAND1Q86VP6 1230 aaKnown RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 ARRDC4Q8NCT1 418 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 CENPIQ92674 756 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 PPP1R10Q96QC0 940 aaKnown RBP11.01□□□□□ -0.65
CLIP1-213ENST00000540338 SMOQ99835 787 aa11.01□□□□□ -0.65
CLIP1-213ENST00000540338 MECRQ9BV79 373 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms