RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 DPYSL2Q16555 572 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 C11orf63Q6NUN7 778 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 ADIPOR2Q86V24 386 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC42-202ENST00000539522 HJURPQ8NCD3 748 aaPredicted RBP13.39□□□□□ -0.27
CCDC42-202ENST00000539522 TEKT4Q8WW24 435 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 RAPGEF5Q92565 580 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 KRT35Q92764 455 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 RPRD1AQ96P16 312 aaPredicted RBP13.39□□□□□ -0.27
CCDC42-202ENST00000539522 ALS2CR12Q96Q35 445 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 P2RY13Q9BPV8 354 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 PCDH18Q9HCL0 1135 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 DNAJC17Q9NVM6 304 aaKnown RBP13.39□□□□□ -0.27
CCDC42-202ENST00000539522 CWC15Q9P013 229 aaKnown RBP13.39□□□□□ -0.27
CCDC42-202ENST00000539522 PPARGC1AQ9UBK2 798 aaKnown RBP13.39□□□□□ -0.27
CCDC42-202ENST00000539522 SLC12A6Q9UHW9 1150 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 FBXL21Q9UKT6 434 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 SLC27A6Q9Y2P4 619 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 ATG2BQ96BY7 2078 aa13.39□□□□□ -0.27
CCDC42-202ENST00000539522 DMDP11532 3685 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 KANSL1LA0AUZ9 987 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 CTAGE9A4FU28 777 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 PRPSAP2O60256 369 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 ALADP13716 330 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 MZF1P28698 734 aaPredicted RBP13.38□□□□□ -0.27
CCDC42-202ENST00000539522 EIF2DP41214 584 aaKnown RBP13.38□□□□□ -0.27
CCDC42-202ENST00000539522 TUBB2AQ13885 445 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 DPYSQ14117 519 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 FUT11Q495W5 492 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 EFHC2Q5JST6 749 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 EMC10Q5UCC4 262 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 Q6ZS52 159 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 POLNQ7Z5Q5 900 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 NT5DC3Q86UY8 548 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 PSTKQ8IV42 348 aaKnown RBP13.38□□□□□ -0.27
CCDC42-202ENST00000539522 TP53INP2Q8IXH6 220 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 APCDD1Q8J025 514 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 SLC35F6Q8N357 371 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 NETO2Q8NC67 525 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 PJA1Q8NG27 643 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 FIBINQ8TAL6 211 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 HSPH1Q92598 858 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 WDR24Q96S15 920 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 HERPUD2Q9BSE4 406 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 TUBB2BQ9BVA1 445 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 DHX35Q9H5Z1 703 aaKnown RBP13.38□□□□□ -0.27
CCDC42-202ENST00000539522 ZDHHC4Q9NPG8 344 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.38□□□□□ -0.27
CCDC42-202ENST00000539522 ETNK2Q9NVF9 386 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 POLR3BQ9NW08 1133 aaPredicted RBP13.38□□□□□ -0.27
CCDC42-202ENST00000539522 TMEM51Q9NW97 253 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 TBC1D30Q9Y2I9 924 aa13.38□□□□□ -0.27
CCDC42-202ENST00000539522 A0A1B0GVM2 712 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 TCAF2A6NFQ2 919 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 PALMO75781 387 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 KAT7O95251 611 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 KIR2DL1P43626 348 aaPredicted RBP13.37□□□□□ -0.27
CCDC42-202ENST00000539522 DGKGP49619 791 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 PEX5P50542 639 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 NR1H3Q13133 447 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 DPYSL3Q14195 570 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 ARL13BQ3SXY8 428 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 BOLA3Q53S33 107 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 ZNF852Q6ZMS4 543 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 CHST9Q7L1S5 443 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 TFAP2DQ7Z6R9 452 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 SYCE1Q8N0S2 351 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 CARNMT1Q8N4J0 409 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 NPWQ8N729 165 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 TERB1Q8NA31 727 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 SORCS1Q8WY21 1168 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 ALG3Q92685 438 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 CLDN23Q96B33 292 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 MSANTD3Q96H12 275 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 MYO19Q96H55 970 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 PNKPQ96T60 521 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 PSMB7Q99436 277 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 DDX50Q9BQ39 737 aaKnown RBP13.37□□□□□ -0.27
CCDC42-202ENST00000539522 ZYG11BQ9C0D3 744 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 ARHGEF4Q9NR80 690 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 ABCB8Q9NUT2 735 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 LCMT1Q9UIC8 334 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 NDRG2Q9UN36 371 aaKnown RBP13.37□□□□□ -0.27
CCDC42-202ENST00000539522 PACSIN2Q9UNF0 486 aaPredicted RBP13.37□□□□□ -0.27
CCDC42-202ENST00000539522 JRKLQ9Y4A0 524 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 CUL9Q8IWT3 2517 aa13.37□□□□□ -0.27
CCDC42-202ENST00000539522 NUP205Q92621 2012 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 A0A0D9SEW6 157 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 FAM170BA6NMN3 283 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 WASH4PA8MWX3 477 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 DCLK1O15075 740 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 DDX3YO15523 660 aaKnown RBP13.36□□□□□ -0.27
CCDC42-202ENST00000539522 CREB3O43889 395 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 RHOQP17081 205 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 DESP17661 470 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 GLDCP23378 1020 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 GJC1P36383 396 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 CSKP41240 450 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 SLC1A1P43005 524 aa13.36□□□□□ -0.27
CCDC42-202ENST00000539522 CTSOP43234 321 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms