RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TAGLN3Q9UI15 199 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 DNAJC16Q9Y2G8 782 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 SPECC1L-ADORA2AF8WAN1 911 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 GABRDO14764 452 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 AP1G2O75843 785 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 KRT36O76013 467 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 LUC7L3O95232 432 aaKnown RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 FYNP06241 537 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 SERPINA6P08185 405 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 NCAM1P13591 858 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 GARSP41250 739 aaKnown RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 INHBEP58166 350 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 PCLAFQ15004 111 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 DNAAF3Q8N9W5 541 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 RBM15BQ8NDT2 890 aaKnown RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 SENP8Q96LD8 212 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 PPP1R10Q96QC0 940 aaKnown RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 KCNK16Q96T55 309 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 SLC9A7Q96T83 725 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 PTPN18Q99952 460 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 CCDC106Q9BWC9 280 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 TSPYL2Q9H2G4 693 aaPredicted RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 CRTAC1Q9NQ79 661 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 ANLNQ9NQW6 1124 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 E2F8A0AVK6 867 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 C17orf102A2RUQ5 167 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 UNCXA6NJT0 531 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 PRR5-ARHGAP8B1AHC4 643 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 HAS3O00219 553 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 PSMG1O95456 288 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 PTPN3P26045 913 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 GP5P40197 560 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 CPT1AP50416 773 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 DAOAP59103 153 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 MXRA7P84157 204 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 ARHGAP8P85298 464 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 UBAP2LQ14157 1087 aaKnown RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 MUM1Q2TAK8 710 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 TEDDM1Q5T9Z0 273 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 FAM43BQ6ZT52 329 aaPredicted RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 C10orf107Q8IVU9 208 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 ZNF669Q96BR6 464 aaPredicted RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 ATXN7L3BQ96GX2 97 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 FCRL3Q96P31 734 aaPredicted RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 CPNE1Q99829 537 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 FAM167BQ9BTA0 163 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 LRRC40Q9H9A6 602 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 FLRT1Q9NZU1 646 aa13.48□□□□□ -0.25
LDLR-203ENST00000535915 TIMM13Q9Y5L4 95 aaPredicted RBP13.48□□□□□ -0.25
LDLR-203ENST00000535915 EME2A4GXA9 379 aaPredicted RBP13.47□□□□□ -0.25
LDLR-203ENST00000535915 MEIS3P2A8K0S8 358 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 FBXO21O94952 628 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 ATP5BP06576 529 aaKnown RBP13.47□□□□□ -0.25
LDLR-203ENST00000535915 USP17L7P0C7H9 530 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 AIF1P55008 147 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 THOC5Q13769 683 aaKnown RBP13.47□□□□□ -0.25
LDLR-203ENST00000535915 TBCCQ15814 346 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 TSNAXIP1Q2TAA8 658 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 GPRIN1Q7Z2K8 1008 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 CTU1Q7Z7A3 348 aaKnown RBP13.47□□□□□ -0.25
LDLR-203ENST00000535915 PPP4R1Q8TF05 950 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 ZNF778Q96MU6 729 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 SYT15Q9BQS2 421 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 SIKE1Q9BRV8 207 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 WDR6Q9NNW5 1121 aaKnown RBP13.47□□□□□ -0.25
LDLR-203ENST00000535915 DDIT4Q9NX09 232 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 TMEM216Q9P0N5 145 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 CPA4Q9UI42 421 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 VANGL2Q9ULK5 521 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 MAGED2Q9UNF1 606 aaPredicted RBP13.47□□□□□ -0.25
LDLR-203ENST00000535915 BPTFQ12830 3046 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 I6L893 689 aaPredicted RBP13.47□□□□□ -0.25
LDLR-203ENST00000535915 AMHP03971 560 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 PROCP04070 461 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 SERPINE1P05121 402 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 GMPRP36959 345 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 GRTP1Q5TC63 336 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 CMC1Q7Z7K0 106 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 FAM35AQ86V20 835 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.47□□□□□ -0.25
LDLR-203ENST00000535915 DTX3LQ8TDB6 740 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 NTAN1Q96AB6 310 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 PCED1BQ96HM7 432 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 SMOQ99835 787 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 SNX15Q9NRS6 342 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 BFARQ9NZS9 450 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 FBXW11Q9UKB1 542 aa13.47□□□□□ -0.25
LDLR-203ENST00000535915 MYBPHLA2RUH7 354 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 ZBTB24O43167 697 aaPredicted RBP13.46□□□□□ -0.25
LDLR-203ENST00000535915 MAGEC1O60732 1142 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 AP2A1O95782 977 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 ZNF865P0CJ78 1059 aaPredicted RBP13.46□□□□□ -0.25
LDLR-203ENST00000535915 ATP6V1C1P21283 382 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 VHLP40337 213 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 INSCQ1MX18 579 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 ARL13BQ3SXY8 428 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 STRA8Q7Z7C7 330 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 DCLK2Q8N568 766 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 NPWQ8N729 165 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms