RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 PCDHB9Q9Y5E1 797 aa16.72■□□□□ 0.27
CLSTN3-204ENST00000535313 EDDM13A0A1B0GTR0 161 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 SH3BP5O60239 455 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 FSBPO95073 299 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 ERBB2P04626 1255 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 SPINK2P20155 84 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 NNMTP40261 264 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 MATKP42679 507 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 CTSOP43234 321 aaPredicted RBP16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 AFF3P51826 1226 aaKnown RBP16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 OXCT1P55809 520 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 SLC6A3Q01959 620 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 NME3Q13232 169 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 RAPGEF1Q13905 1077 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 TEAD4Q15561 434 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 HSP90AA4PQ58FG1 418 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 C9orf64Q5T6V5 341 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 OLFML1Q6UWY5 402 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 USP30Q70CQ3 517 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 ZDHHC17Q8IUH5 632 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 FAM71AQ8IYT1 594 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 APCDD1Q8J025 514 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 C1orf216Q8TAB5 229 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 PPP1R9BQ96SB3 815 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 PRMT1Q99873 361 aaKnown RBP16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 SCNM1Q9BWG6 230 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 ADAM33Q9BZ11 813 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 GAREM1Q9H706 876 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 FBXL12Q9NXK8 326 aa16.71■□□□□ 0.27
CLSTN3-204ENST00000535313 KNL1Q8NG31 2342 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 FRYQ5TBA9 3013 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 A0A1B0GVM2 712 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 A0A1B0GVT2 93 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 TCAF2A6NFQ2 919 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 TTC34A8MYJ7 566 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 DAB1O75553 588 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 KRT37O76014 449 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 TRIM16O95361 564 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 TOP3BO95985 862 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 PROS1P07225 676 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 PNMA6AP0CW24 399 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 PDGFRAP16234 1089 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 CSNK1EP49674 416 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 SULT2A1Q06520 285 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 KCNJ12Q14500 433 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 TRIP6Q15654 476 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 CST6Q15828 149 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 ZNF423Q2M1K9 1284 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 HLA-BQ31612 363 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 PTPN20Q4JDL3 420 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 CT47A1Q5JQC4 288 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 MIIPQ5JXC2 388 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 LRSAM1Q6UWE0 723 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 UNQ6494/PRO21346Q6UXR6 183 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 SLC26A9Q7LBE3 791 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 CIR1Q86X95 450 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 MMAAQ8IVH4 418 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 NAXDQ8IW45 347 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 CCAR2Q8N163 923 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 TMEM35BQ8NCS4 154 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 BIRC7Q96CA5 298 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 RPL10LQ96L21 214 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 CAMK1GQ96NX5 476 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 RPRD1AQ96P16 312 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 OMDQ99983 421 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 PLCB1Q9NQ66 1216 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 RRN3Q9NYV6 651 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 SLCO3A1Q9UIG8 710 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 ITIH6Q6UXX5 1313 aa16.7■□□□□ 0.26
CLSTN3-204ENST00000535313 FAM47DPA6NHR8 397 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 MID1O15344 667 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 HYAL3O43820 417 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 ZNF883P0CG24 379 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 CD27P26842 260 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 NOS2P35228 1153 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 FAM193AP78312 1265 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 AUHQ13825 339 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 DRAP1Q14919 205 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 KLHDC7AQ5VTJ3 777 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 FBXL22Q6P050 247 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 ZNF397Q8NF99 534 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 SETD7Q8WTS6 366 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 IL21RQ9HBE5 538 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 OSGEPQ9NPF4 335 aa16.69■□□□□ 0.26
CLSTN3-204ENST00000535313 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 A0A1W2PP55 124 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 LRRC72A6NJI9 287 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 C1QTNF9BB2RNN3 333 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 M0QYT0 321 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 RNASEH2AO75792 299 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 C1QTNF9P0C862 333 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 CYP11B1P15538 503 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 MZF1P28698 734 aaPredicted RBP16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 SLC8A1P32418 973 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 GRIA4P48058 902 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 PSMD8P48556 350 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 STK19P49842 368 aaPredicted RBP16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 PLK1P53350 603 aa16.68■□□□□ 0.26
CLSTN3-204ENST00000535313 RNASE9P60153 205 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms