RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PIP4P1Q86T03 277 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 CCDC117Q8IWD4 279 aaPredicted RBP3.12□□□□□ -1.91
CD44-238ENST00000534296 FAM185AQ8N0U4 392 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 PAQR4Q8N4S7 273 aaPredicted RBP3.12□□□□□ -1.91
CD44-238ENST00000534296 ARL14EPQ8N8R7 260 aaPredicted RBP3.12□□□□□ -1.91
CD44-238ENST00000534296 POF1BQ8WVV4 589 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 C18orf8Q96DM3 657 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 PIMREGQ9BSJ6 248 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 RTKNQ9BST9 563 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 CRB3Q9BUF7 120 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 PPCSQ9HAB8 311 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 MLXIPQ9HAP2 919 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 TMLHEQ9NVH6 421 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.12□□□□□ -1.91
CD44-238ENST00000534296 LRFN1Q9P244 771 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 HERC5Q9UII4 1024 aaKnown RBP3.12□□□□□ -1.91
CD44-238ENST00000534296 CDC23Q9UJX2 597 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 UTS2RQ9UKP6 389 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 BAG5Q9UL15 447 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 RAB21Q9UL25 225 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 SLC12A4Q9UP95 1085 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 LAMP3Q9UQV4 416 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 RIPOR2Q9Y4F9 1068 aa3.12□□□□□ -1.91
CD44-238ENST00000534296 CYP3A7-CYP3A51PA0A087WV96 503 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 LOC105369274A0A096LPK9 316 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 LOC102723532A0A0G2JNH3 316 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 TMEM247A6NEH6 219 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 MCIDASD6RGH6 385 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 M0QZQ0 153 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 SYT5O00445 386 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 CCNT1O60563 726 aaKnown RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 TCEA3O75764 348 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 NDUFB8O95169 186 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 NTN1O95631 604 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 CYP3A4P08684 503 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 T-ENOLP0DO92 83 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 IGFBP2P18065 325 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 CYP3A7P24462 503 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 TRAPPC10P48553 1259 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 RPL15P61313 204 aaKnown RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 PPATQ06203 517 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 PMPCAQ10713 525 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 PGM5Q15124 567 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 SMTNL2Q2TAL5 461 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 ZACNQ401N2 412 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 CCDC38Q502W7 563 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 ZNF517Q6ZMY9 492 aaPredicted RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 ANKS1BQ7Z6G8 1248 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 ZNF354CQ86Y25 554 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 KLBQ86Z14 1044 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 SMC5Q8IY18 1101 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 SAMD14Q8IZD0 417 aaPredicted RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 ADGRF3Q8IZF5 1079 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 OR4N4Q8N0Y3 316 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 ENDOVQ8N8Q3 282 aaKnown RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 ANKRD42Q8N9B4 389 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 SPATA5Q8NB90 893 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 RUBCNQ92622 972 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 THOC3Q96J01 351 aaKnown RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 ADAD1Q96M93 576 aaKnown RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 KATNAL1Q9BW62 490 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 GATA5Q9BWX5 397 aaPredicted RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 OSBPL5Q9H0X9 879 aaPredicted RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 RBM38Q9H0Z9 239 aaKnown RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 ELAC1Q9H777 363 aaKnown RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 AAMDCQ9H7C9 122 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 MLXIPLQ9NP71 852 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 NDUFAF4Q9P032 175 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 IGSF9Q9P2J2 1179 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 SLC25A13Q9UJS0 675 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 PCDHA12Q9UN75 941 aa3.11□□□□□ -1.91
CD44-238ENST00000534296 C19orf53Q9UNZ5 99 aaPredicted RBP3.11□□□□□ -1.91
CD44-238ENST00000534296 A0A087WV62 115 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 LOC102724159A0A0B4J2E5 919 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 TMEM272A0A1B0GTI8 110 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 GAGE12JA6NER3 117 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 AQP12BA6NM10 295 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 SLC38A8A6NNN8 435 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 IFRD1O00458 451 aaPredicted RBP3.1□□□□□ -1.91
CD44-238ENST00000534296 TRIM38O00635 465 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 ACTL6BO94805 426 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 TOMM40O96008 361 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 ENTPD1P49961 510 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 CDK7P50613 346 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 PGGT1BP53609 377 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 RCAN1P53805 252 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 AP2B1P63010 937 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 SHC2P98077 582 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 BIRC3Q13489 604 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 SEMA3AQ14563 771 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 PWP2Q15269 919 aaKnown RBP3.1□□□□□ -1.91
CD44-238ENST00000534296 PUM3Q15397 648 aaKnown RBP3.1□□□□□ -1.91
CD44-238ENST00000534296 PFKFB4Q16877 469 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 BTBD16Q32M84 506 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 PIK3CD-AS1Q5SR53 167 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 ANKRD45Q5TZF3 282 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 CAMK1DQ8IU85 385 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 ZDHHC17Q8IUH5 632 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 DPP10Q8N608 796 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 EID2BQ96D98 161 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms