RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 CTAGE4Q8IX94 777 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 DIS3L2Q8IYB7 885 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 STPG3Q8N7X2 389 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 KYQ8NBH2 561 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 RNF169Q8NCN4 708 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 PPFIBP2Q8ND30 876 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ZNF680Q8NEM1 530 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 TTLQ8NG68 377 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 LHFPL5Q8TAF8 219 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 TEX47Q8TBZ9 253 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 IFI44Q8TCB0 444 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SLC26A7Q8TE54 656 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 NAT14Q8WUY8 206 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ZCCHC14Q8WYQ9 949 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 NCLNQ969V3 563 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 RMND5BQ96G75 393 aaPredicted RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 C16orf92Q96LL3 132 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 FAM20AQ96MK3 541 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ZNF560Q96MR9 790 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 TMEM209Q96SK2 561 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 HEPHQ9BQS7 1158 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 AP1M1Q9BXS5 423 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ZNF341Q9BYN7 854 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 PITHD1Q9GZP4 211 aaPredicted RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 CNOT10Q9H9A5 744 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 FANCEQ9HB96 536 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 SYTL2Q9HCH5 934 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 NGRNQ9NPE2 291 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 DLL4Q9NR61 685 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 TBC1D22BQ9NU19 505 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ABCF3Q9NUQ8 709 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ARHGEF38Q9NXL2 777 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 MRPL39Q9NYK5 338 aaKnown RBP5.69□□□□□ -1.5
CD44-236ENST00000533222 STMN3Q9NZ72 180 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 DLGAP2Q9P1A6 1054 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 TBC1D14Q9P2M4 693 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 TLK1Q9UKI8 766 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 CBY1Q9Y3M2 126 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 HEY1Q9Y5J3 304 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 CACNG2Q9Y698 323 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 TCHHQ07283 1943 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 MRC2Q9UBG0 1479 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ARHGEF11O15085 1522 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 ARHGEF12Q9NZN5 1544 aa5.69□□□□□ -1.5
CD44-236ENST00000533222 BCORL1Q5H9F3 1711 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 HECW2Q9P2P5 1572 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 NPHP4O75161 1426 aaPredicted RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 PDS5BQ9NTI5 1447 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 FAM237AA0A1B0GTK4 181 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 FAM172BPA6NC97 362 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 TARM1B6A8C7 271 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 O00370 1275 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 POLR2DO15514 142 aaKnown RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 NCK2O43639 380 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 NUAK1O60285 661 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 PFKFB2O60825 505 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ATP9AO75110 1047 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 NIPSNAP2O75323 286 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 EPN2O95208 641 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 CHEK2O96017 543 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 NPPAP01160 153 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 OPN1MWP04001 364 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 KRT7P08729 469 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 OPN1MW2P0DN77 364 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 OPN1MW3P0DN78 364 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ITGB6P18564 788 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 CIITAP33076 1130 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 KRT2P35908 639 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 MAGEA11P43364 429 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 GDI2P50395 445 aaKnown RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 AFF3P51826 1226 aaKnown RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 CACNA2D1P54289 1103 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 USP14P54578 494 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 P2RX3P56373 397 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 RAB14P61106 215 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 IL13RA1P78552 427 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 XIAPP98170 497 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 PPP2R2BQ00005 443 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ACY1Q03154 408 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 EXOSC9Q06265 439 aaKnown RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 CKAP4Q07065 602 aaKnown RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 FAPQ12884 760 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 AIMP1Q12904 312 aaKnown RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 GIT2Q14161 759 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 KCNAB1Q14722 419 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ACAP2Q15057 778 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 C5orf22Q49AR2 442 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ATP13A4Q4VNC1 1196 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 TCTE1Q5JU00 501 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 TCHHL1Q5QJ38 904 aaPredicted RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 PRR31Q5SQ13 230 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 INTS11Q5TA45 600 aaKnown RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 RNF220Q5VTB9 566 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 LRIG3Q6UXM1 1119 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 LINC00299Q6ZSB3 139 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 HDDC2Q7Z4H3 204 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 GPR142Q7Z601 462 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 DNAAF5Q86Y56 855 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 CPXCR1Q8N123 301 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms