RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CLDN11O75508 207 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 HOXB2P14652 356 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 POLR2EP19388 210 aaKnown RBP20.47■□□□□ 0.87
CPSF1-209ENST00000532725 CNR2P34972 360 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 IL12RB1P42701 662 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 PLK1P53350 603 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 CDH4P55283 916 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 NRG1Q02297 640 aaPredicted RBP20.47■□□□□ 0.87
CPSF1-209ENST00000532725 GFPT1Q06210 699 aaPredicted RBP20.47■□□□□ 0.87
CPSF1-209ENST00000532725 FUT11Q495W5 492 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 ALFQ53S48 1182 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 CXorf57Q6NSI4 855 aaKnown RBP20.47■□□□□ 0.87
CPSF1-209ENST00000532725 KIAA1211LQ6NV74 962 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 LRRC31Q6UY01 552 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 CNGA4Q8IV77 575 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 ARFGAP1Q8N6T3 406 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 FNIP1Q8TF40 1166 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 CYB5D2Q8WUJ1 264 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 NTAN1Q96AB6 310 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 TRIM7Q9C029 511 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 THAP2Q9H0W7 228 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 MRPL47Q9HD33 250 aaKnown RBP20.47■□□□□ 0.87
CPSF1-209ENST00000532725 POLMQ9NP87 494 aaPredicted RBP20.47■□□□□ 0.87
CPSF1-209ENST00000532725 MYO1AQ9UBC5 1043 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 OR12D3Q9UGF7 316 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 PLA2G4CQ9UP65 541 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 TBC1D30Q9Y2I9 924 aa20.47■□□□□ 0.87
CPSF1-209ENST00000532725 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.46■□□□□ 0.87
CPSF1-209ENST00000532725 ATP5BP06576 529 aaKnown RBP20.46■□□□□ 0.87
CPSF1-209ENST00000532725 DLDP09622 509 aaKnown RBP20.46■□□□□ 0.87
CPSF1-209ENST00000532725 CSKP41240 450 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 ZNF252P-AS1Q0IIN9 211 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 SCAPQ12770 1279 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 ZNF177Q13360 481 aaPredicted RBP20.46■□□□□ 0.87
CPSF1-209ENST00000532725 SLC12A1Q13621 1099 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 SLC18A3Q16572 532 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 PLEKHG6Q3KR16 790 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 PITRM1Q5JRX3 1037 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 SLFN11Q7Z7L1 901 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 APCDD1Q8J025 514 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 TC2NQ8N9U0 490 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 OR52K2Q8NGK3 314 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 ALG14Q96F25 216 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 MPP6Q9NZW5 540 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 PPARGC1AQ9UBK2 798 aaKnown RBP20.46■□□□□ 0.87
CPSF1-209ENST00000532725 SCINQ9Y6U3 715 aa20.46■□□□□ 0.87
CPSF1-209ENST00000532725 PIEZO1Q92508 2521 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 FAM72CH0Y354 149 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 ALDH1A2O94788 518 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 CYP1A2P05177 515 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 PSMA2P25787 234 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 MZF1P28698 734 aaPredicted RBP20.45■□□□□ 0.86
CPSF1-209ENST00000532725 GALCP54803 685 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 OXCT1P55809 520 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 SRSF5Q13243 272 aaKnown RBP20.45■□□□□ 0.86
CPSF1-209ENST00000532725 FAM72AQ5TYM5 149 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 MANEALQ5VSG8 457 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 ANO7Q6IWH7 933 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 FAM72DQ6L9T8 149 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 SCYL2Q6P3W7 929 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 FAM72BQ86X60 149 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 SUMF1Q8NBK3 374 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 MDGA1Q8NFP4 955 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 NKD2Q969F2 451 aaPredicted RBP20.45■□□□□ 0.86
CPSF1-209ENST00000532725 TMEM245Q9H330 911 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 NHEJ1Q9H9Q4 299 aaPredicted RBP20.45■□□□□ 0.86
CPSF1-209ENST00000532725 ZNF212Q9UDV6 495 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 RAD54BQ9Y620 910 aa20.45■□□□□ 0.86
CPSF1-209ENST00000532725 GPR179Q6PRD1 2367 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 TCRBV21S2A2A0A5A6 115 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 MOCS3O95396 460 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 MYO19Q96H55 970 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 MRGPRX3Q96LB0 322 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 FEM1AQ9BSK4 669 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 EPC1Q9H2F5 836 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 FZD10Q9ULW2 581 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 OR51B4Q9Y5P0 310 aa20.44■□□□□ 0.86
CPSF1-209ENST00000532725 RIF1Q5UIP0 2472 aaKnown RBP20.44■□□□□ 0.86
CPSF1-209ENST00000532725 AKR1B10O60218 316 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 ASLP04424 464 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 GABRG2P18507 467 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 PRKCHP24723 683 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 CTSOP43234 321 aaPredicted RBP20.43■□□□□ 0.86
CPSF1-209ENST00000532725 AIF1P55008 147 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 SERPINA13PQ6UXR4 307 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 SETD3Q86TU7 594 aaPredicted RBP20.43■□□□□ 0.86
CPSF1-209ENST00000532725 PYROXD2Q8N2H3 581 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 HMGB4Q8WW32 186 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 GAB3Q8WWW8 586 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 ARHGEF26Q96DR7 871 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 ERLEC1Q96DZ1 483 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 CCDC42Q96M95 316 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 PPP1R9BQ96SB3 815 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 ZYG11BQ9C0D3 744 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 DEF6Q9H4E7 631 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 ERVW-1Q9UQF0 538 aa20.43■□□□□ 0.86
CPSF1-209ENST00000532725 LRIG2O94898 1065 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 LMNAP02545 664 aaKnown RBP20.42■□□□□ 0.86
CPSF1-209ENST00000532725 HLA-EP13747 358 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 DESP17661 470 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms