RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 STK10O94804 968 aaKnown RBP21.6■■□□□ 1.05
VPS28-208ENST00000527797 CKMP06732 381 aa21.6■■□□□ 1.05
VPS28-208ENST00000527797 DDX6P26196 483 aaKnown RBP eCLIP21.6■■□□□ 1.05
VPS28-208ENST00000527797 GARSP41250 739 aaKnown RBP21.6■■□□□ 1.05
VPS28-208ENST00000527797 NRLP54845 237 aa21.6■■□□□ 1.05
VPS28-208ENST00000527797 PPIDQ08752 370 aaKnown RBP21.6■■□□□ 1.05
VPS28-208ENST00000527797 ARHGAP15Q53QZ3 475 aa21.6■■□□□ 1.05
VPS28-208ENST00000527797 ZNF697Q5TEC3 545 aa21.6■■□□□ 1.05
VPS28-208ENST00000527797 SHKBP1Q8TBC3 707 aa21.6■■□□□ 1.05
VPS28-208ENST00000527797 TIFAQ96CG3 184 aa21.6■■□□□ 1.05
VPS28-208ENST00000527797 HDAC11Q96DB2 347 aa21.6■■□□□ 1.05
VPS28-208ENST00000527797 C5orf60A6NFR6 353 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 ATP8B1O43520 1251 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 GCATO75600 419 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 LATS1O95835 1130 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 VAV1P15498 845 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 SLC6A4P31645 630 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 CCR2P41597 374 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 C5orf22Q49AR2 442 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 ALFQ53S48 1182 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 FAM133BQ5BKY9 247 aaKnown RBP21.59■■□□□ 1.05
VPS28-208ENST00000527797 ADGRF1Q5T601 910 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 HIBCHQ6NVY1 386 aaPredicted RBP21.59■■□□□ 1.05
VPS28-208ENST00000527797 P2RY11Q96G91 374 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 CDCA3Q99618 268 aaPredicted RBP21.59■■□□□ 1.05
VPS28-208ENST00000527797 SLC46A2Q9BY10 475 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 ADAM7Q9H2U9 754 aa21.59■■□□□ 1.05
VPS28-208ENST00000527797 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.58■■□□□ 1.05
VPS28-208ENST00000527797 DFFAO00273 331 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 TP73O15350 636 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 CNTN5O94779 1100 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 IRAK1P51617 712 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 RABGAP1LQ5R372 815 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 GPR158Q5T848 1215 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 AFMIDQ63HM1 303 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 RFWD3Q6PCD5 774 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 RHBDF2Q6PJF5 856 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 TFAP2DQ7Z6R9 452 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 ARHGAP12Q8IWW6 846 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 UMODL1-AS1Q8N2C9 162 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 PPP2R3CQ969Q6 453 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 WBP2Q969T9 261 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 FUT8Q9BYC5 575 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 SLC39A8Q9C0K1 460 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 RETREG1Q9H6L5 497 aa21.58■■□□□ 1.05
VPS28-208ENST00000527797 LSM7Q9UK45 103 aaKnown RBP21.58■■□□□ 1.05
VPS28-208ENST00000527797 SOBPA7XYQ1 873 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 MTSS1O43312 755 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 NDST2P52849 883 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 ZNF33AQ06730 810 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 CASP8Q14790 479 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 MORF4L2Q15014 288 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 STXBP5Q5T5C0 1151 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 RNASEH2BQ5TBB1 312 aaKnown RBP21.58■■□□□ 1.04
VPS28-208ENST00000527797 LRRC49Q8IUZ0 686 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 CCDC110Q8TBZ0 833 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 ADAMTS19Q8TE59 1207 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 ZNF707Q96C28 371 aaPredicted RBP21.58■■□□□ 1.04
VPS28-208ENST00000527797 MRPL38Q96DV4 380 aaKnown RBP21.58■■□□□ 1.04
VPS28-208ENST00000527797 TCEAL4Q96EI5 215 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 TASP1Q9H6P5 420 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 NDFIP2Q9NV92 336 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 STOML2Q9UJZ1 356 aa21.58■■□□□ 1.04
VPS28-208ENST00000527797 A0A0A0MRY4 1105 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 RFXAPO00287 272 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 NRG2O14511 850 aaPredicted RBP21.57■■□□□ 1.04
VPS28-208ENST00000527797 ZNF197O14709 1029 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 MOSPD3O75425 235 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 MAPKAPK2P49137 400 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 BASP1P80723 227 aaKnown RBP21.57■■□□□ 1.04
VPS28-208ENST00000527797 TEAD2Q15562 447 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 GRASPQ7Z6J2 395 aaPredicted RBP21.57■■□□□ 1.04
VPS28-208ENST00000527797 PPIL6Q8IXY8 311 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 CCDC13Q8IYE1 715 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 MREGQ8N565 214 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 ATPAF2Q8N5M1 289 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 MYEOVQ96EZ4 313 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 SPATA13Q96N96 652 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 TSPYL1Q9H0U9 437 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 PIDD1Q9HB75 910 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 SEPT10Q9P0V9 454 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 SH3BP1Q9Y3L3 701 aa21.57■■□□□ 1.04
VPS28-208ENST00000527797 MTCL1Q9Y4B5 1905 aaKnown RBP21.56■■□□□ 1.04
VPS28-208ENST00000527797 SMAPO00193 183 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 RNF103O00237 685 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 CCNCP24863 283 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 HSPA9P38646 679 aaKnown RBP21.56■■□□□ 1.04
VPS28-208ENST00000527797 ZXDBP98169 803 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 DHX9Q08211 1270 aaKnown RBP21.56■■□□□ 1.04
VPS28-208ENST00000527797 ANKRD20A2Q5SQ80 823 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 ANKRD20A1Q5TYW2 823 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 ANKRD20A3Q5VUR7 823 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 ARHGEF18Q6ZSZ5 1173 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 TAB3Q8N5C8 712 aaPredicted RBP21.56■■□□□ 1.04
VPS28-208ENST00000527797 CPT1BQ92523 772 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 TSGA13Q96PP4 275 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 FOXP3Q9BZS1 431 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 SHOC2Q9UQ13 582 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 ZNF510Q9Y2H8 683 aa21.56■■□□□ 1.04
VPS28-208ENST00000527797 ZFP37Q9Y6Q3 630 aaPredicted RBP21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms