RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 STRNO43815 780 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 CRTAMO95727 393 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 GUCA1CO95843 209 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 C3P01024 1663 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 ERCC2P18074 760 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 NFKB1P19838 968 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 CDK7P50613 346 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 PRAMEF19Q5SWL8 479 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 PPP1R26Q5T8A7 1209 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 PKN3Q6P5Z2 889 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 ALYREFQ86V81 257 aaKnown RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 NT5DC4Q86YG4 428 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 PSTKQ8IV42 348 aaKnown RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 CARNMT1Q8N4J0 409 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 DDI1Q8WTU0 396 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 SHISA4Q96DD7 197 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 SEMA6AQ9H2E6 1030 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 DNAJC5Q9H3Z4 198 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 DDX18Q9NVP1 670 aaKnown RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 SCN3BQ9NY72 215 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 NID2Q14112 1375 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 LYPLA1O75608 230 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 ARF4P18085 180 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 MZF1P28698 734 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 SOAT1P35610 550 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 RTP1P59025 263 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 RHOAP61586 193 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 ACVR2BQ13705 512 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 UBAP2LQ14157 1087 aaKnown RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 MFSD10Q14728 455 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 ASTE1Q2TB18 679 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 CACHD1Q5VU97 1274 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 PLEKHA7Q6IQ23 1121 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 GFM2Q969S9 779 aaKnown RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 FAM50BQ9Y247 325 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 KNDC1Q76NI1 1749 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 FAM95CA0A1B0GW59 222 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 C2orf71A6NGG8 1288 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 A8MUI8 341 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 LRCH4O75427 683 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 TSPAN8P19075 237 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 UGT3A1Q6NUS8 523 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 CRELD2Q6UXH1 353 aaPredicted RBP12.92□□□□□ -0.34
USP53-209ENST00000514665 ABHD15Q6UXT9 468 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 ZNF410Q86VK4 478 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 RIN3Q8TB24 985 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 DTNBP1Q96EV8 351 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 PPP1R10Q96QC0 940 aaKnown RBP12.92□□□□□ -0.34
USP53-209ENST00000514665 ACTR8Q9H981 624 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 SIX2Q9NPC8 291 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 SNCAIPQ9Y6H5 919 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 FAM155BO75949 473 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 MBL2P11226 248 aaPredicted RBP12.92□□□□□ -0.34
USP53-209ENST00000514665 SCNN1GP51170 649 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 PWP1Q13610 501 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 ELMSAN1Q6PJG2 1045 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 FBXO39Q8N4B4 442 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 FITM2Q8N6M3 262 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 ANKRD27Q96NW4 1050 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 SCUBE2Q9NQ36 999 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 NFAT5O94916 1531 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 PEAK1Q9H792 1746 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 CLDN5O00501 218 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 SHOX2O60902 331 aaPredicted RBP12.92□□□□□ -0.34
USP53-209ENST00000514665 DAB1O75553 588 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 FAM58BPP0C7Q3 252 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 NPR3P17342 541 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 NRF1Q16656 503 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 IRGCQ6NXR0 463 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 UNC93AQ86WB7 457 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 SPATA6LQ8N4H0 392 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 HSFY1Q96LI6 401 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 DCUN1D5Q9BTE7 237 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 TEX12Q9BXU0 123 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 RRN3Q9NYV6 651 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 BCL9LQ86UU0 1499 aa12.92□□□□□ -0.34
USP53-209ENST00000514665 PIK3C2AO00443 1686 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 HNRNPCL2B2RXH8 293 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 SCAMP3O14828 347 aaKnown RBP12.91□□□□□ -0.34
USP53-209ENST00000514665 ZNF682O95780 498 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 RPL14P50914 215 aaKnown RBP12.91□□□□□ -0.34
USP53-209ENST00000514665 GBE1Q04446 702 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 TRAF2Q12933 501 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 POLD3Q15054 466 aaPredicted RBP12.91□□□□□ -0.34
USP53-209ENST00000514665 CYP51A1Q16850 503 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 AARS2Q5JTZ9 985 aaKnown RBP12.91□□□□□ -0.34
USP53-209ENST00000514665 ANKS6Q68DC2 871 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 ECHDC2Q86YB7 292 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 SLC22A9Q8IVM8 553 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 MYO1HQ8N1T3 1032 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 PRKD2Q9BZL6 878 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 POMKQ9H5K3 350 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 TRPM5Q9NZQ8 1165 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 DSEQ9UL01 958 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 PCDHB8Q9UN66 801 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 ATP6AP2A0A1C7CYW4 349 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 PLSCR1O15162 318 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 NKRFO15226 690 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP53-209ENST00000514665 ATP6AP2O75787 350 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 ERBB2P04626 1255 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms