RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TRMT10CQ7L0Y3 403 aaKnown RBP16.43■□□□□ 0.22
NUP54-214ENST00000514307 TMC8Q8IU68 726 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 GSPT2Q8IYD1 628 aaKnown RBP16.43■□□□□ 0.22
NUP54-214ENST00000514307 CCDC13Q8IYE1 715 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 ZNF683Q8IZ20 524 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 LGI2Q8N0V4 545 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 MAB21L3Q8N8X9 362 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 HDAC11Q96DB2 347 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 P2RY11Q96G91 374 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 CYP2S1Q96SQ9 504 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 LGMNQ99538 433 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 PIDD1Q9HB75 910 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 ZNF446Q9NWS9 450 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 FAM153AQ9UHL3 310 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 XPO7Q9UIA9 1087 aaKnown RBP16.43■□□□□ 0.22
NUP54-214ENST00000514307 SHOC2Q9UQ13 582 aa16.43■□□□□ 0.22
NUP54-214ENST00000514307 COL4A4P53420 1690 aaPredicted RBP16.43■□□□□ 0.22
NUP54-214ENST00000514307 TRIOBPQ9H2D6 2365 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 A0A0A0MRY4 1105 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 CCDC195A0A1B0GUA6 201 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 PSMD3O43242 534 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 PPFIA2O75334 1257 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 CLDN11O75508 207 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 CSPG5O95196 566 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 CKMP06732 381 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 EPCAMP16422 314 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 PMS2P54278 862 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 GDF10P55107 478 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 CDH4P55283 916 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 CDK16Q00536 496 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 ANO4Q32M45 955 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 ANKRD20A2Q5SQ80 823 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 ANKRD20A1Q5TYW2 823 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 ANKRD20A3Q5VUR7 823 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 RHBDF2Q6PJF5 856 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 HTR3DQ70Z44 454 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 PID1Q7Z2X4 250 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 RBM23Q86U06 439 aaKnown RBP16.42■□□□□ 0.22
NUP54-214ENST00000514307 ZCCHC9Q8N567 271 aaKnown RBP16.42■□□□□ 0.22
NUP54-214ENST00000514307 NSMCE1Q8WV22 266 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 SPATA13Q96N96 652 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 PPP1R2P1Q96PQ5 205 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 ADAM7Q9H2U9 754 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 TASP1Q9H6P5 420 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 RAB6BQ9NRW1 208 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 HAUS2Q9NVX0 235 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 MPP6Q9NZW5 540 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 STOML2Q9UJZ1 356 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 AGO1Q9UL18 857 aaKnown RBP16.42■□□□□ 0.22
NUP54-214ENST00000514307 SH3BP1Q9Y3L3 701 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 MFHAS1Q9Y4C4 1052 aa16.42■□□□□ 0.22
NUP54-214ENST00000514307 PATJQ8NI35 1801 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.41■□□□□ 0.22
NUP54-214ENST00000514307 GOLGA6L7A0A1B0GV03 622 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 A0A1W2PRU2 124 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 TYW5A2RUC4 315 aaKnown RBP16.41■□□□□ 0.22
NUP54-214ENST00000514307 E7EVH7 732 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 DFFAO00273 331 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 PER2O15055 1255 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 MATN3O15232 486 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 CHADO15335 359 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 EIF3HO15372 352 aaKnown RBP eCLIP16.41■□□□□ 0.22
NUP54-214ENST00000514307 NEBLO76041 1014 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 MAP3K6O95382 1288 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 OR1E1P30953 314 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 CHKAP35790 457 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 GGCXP38435 758 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 LMAN1P49257 510 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 ARL4CP56559 192 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 ZNF177Q13360 481 aaPredicted RBP16.41■□□□□ 0.22
NUP54-214ENST00000514307 PRPSAP1Q14558 356 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 PARP15Q460N3 678 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 RNASEH2BQ5TBB1 312 aaKnown RBP16.41■□□□□ 0.22
NUP54-214ENST00000514307 AFMIDQ63HM1 303 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 ITPRIPL1Q6GPH6 555 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 CHRDL2Q6WN34 429 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 CENPUQ71F23 418 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 B4GALNT4Q76KP1 1039 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 PRUNE1Q86TP1 453 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 NLRP14Q86W24 1093 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 CCDC117Q8IWD4 279 aaPredicted RBP16.41■□□□□ 0.22
NUP54-214ENST00000514307 ATPAF2Q8N5M1 289 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 GLIS1Q8NBF1 620 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 FATE1Q969F0 183 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 EXOC4Q96A65 974 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 GDAP1L1Q96MZ0 367 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 RUFY1Q96T51 708 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 SLC46A2Q9BY10 475 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 SLC39A8Q9C0K1 460 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 NEUROG2Q9H2A3 272 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 CERS4Q9HA82 394 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 DZANK1Q9NVP4 752 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 SEPT10Q9P0V9 454 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 DNMT3BQ9UBC3 853 aaKnown RBP16.41■□□□□ 0.22
NUP54-214ENST00000514307 CPQQ9Y646 472 aa16.41■□□□□ 0.22
NUP54-214ENST00000514307 GOLGA6CA6NDK9 693 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 GOLGA6BA6NDN3 693 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 RNF103O00237 685 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 OPA1O60313 960 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 KLKB1P03952 638 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms