RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 PRRG4Q9BZD6 226 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 SMYD3Q9H7B4 428 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 GPAMQ9HCL2 828 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 AVENQ9NQS1 362 aaPredicted RBP4.34□□□□□ -1.72
VCAN-209ENST00000513016 SCOCQ9UIL1 159 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 ZNF232Q9UNY5 417 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 TBC1D30Q9Y2I9 924 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 ATRNO75882 1429 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 DEPDC5O75140 1603 aa4.34□□□□□ -1.72
VCAN-209ENST00000513016 TRUB2O95900 331 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 VIPP01282 170 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ANXA6P08133 673 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ICAM3P32942 547 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 GPD2P43304 727 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PTPN9P43378 593 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MAGOHP61326 146 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 TMEM259Q4ZIN3 620 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 COLEC12Q5KU26 742 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HIBCHQ6NVY1 386 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 FBXO38Q6PIJ6 1188 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 NRSN1Q8IZ57 195 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HERVK_113Q902F9 699 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 RIT1Q92963 219 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MED8Q96G25 268 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 C12orf42Q96LP6 360 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 SLC9A7Q96T83 725 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 TBL1YQ9BQ87 522 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 BCL2L12Q9HB09 334 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 COMMD8Q9NX08 183 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HBS1LQ9Y450 684 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 IQGAP1P46940 1657 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 IRS2Q9Y4H2 1338 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CYP3A7-CYP3A51PA0A087WV96 503 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ISM1B1AKI9 464 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PLEKP08567 350 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 CYP3A7P24462 503 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HTR7P34969 479 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ILF3Q12906 894 aaKnown RBP eCLIP4.33□□□□□ -1.72
VCAN-209ENST00000513016 TRIP4Q15650 581 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 TMEM119Q4V9L6 283 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ESRP1Q6NXG1 681 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 FUT10Q6P4F1 479 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 STRADAQ7RTN6 431 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PHYKPLQ8IUZ5 450 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 SPATA4Q8NEY3 305 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 FERD3LQ96RJ6 166 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 KCNS3Q9BQ31 491 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HPS5Q9UPZ3 1129 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 POLR1DQ9Y2S0 133 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MTO1Q9Y2Z2 717 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 COLEC10Q9Y6Z7 277 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MYO1GB0I1T2 1018 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PJA2O43164 708 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 VARSP26640 1264 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 ALDH18A1P54886 795 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 COPZ1P61923 177 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CAP1Q01518 475 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HIC1Q14526 733 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 SMAD1Q15797 465 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 TBC1D25Q3MII6 688 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 GRTP1Q5TC63 336 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 BHLHB9Q6PI77 547 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PRR23BQ6ZRT6 265 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MCEMP1Q8IX19 187 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CERS5Q8N5B7 392 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 OR56A4Q8NGH8 313 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 LRRC46Q96FV0 321 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 BCO2Q9BYV7 579 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ABCB6Q9NP58 842 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 KRT84Q9NSB2 600 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CLIC5Q9NZA1 410 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.33□□□□□ -1.723e-9■■■□□ 17.2
VCAN-209ENST00000513016 SUCOQ9UBS9 1254 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 ADAM28Q9UKQ2 775 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 SOX13Q9UN79 622 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 FZD1Q9UP38 647 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 VSTM5A8MXK1 200 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 TK2O00142 265 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CYP7B1O75881 506 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 IDSP22304 550 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 SP100P23497 879 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 HPCAL1P37235 193 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ALDH9A1P49189 494 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MKRN4PQ13434 485 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 LRRC6Q86X45 466 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 TEX9Q8N6V9 391 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MAB21L3Q8N8X9 362 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ELMO1Q92556 727 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MCRS1Q96EZ8 462 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 C3orf14Q9HBI5 128 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 DCTN4Q9UJW0 460 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 H3BNH8 94 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 FZD9O00144 591 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 OR10H2O60403 315 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CCNT2O60583 730 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 PSMD10O75832 226 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 LYPLA2O95372 231 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HIST1H2ABP04908 130 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 GPR15P49685 360 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PEX5P50542 639 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms