RNA–Protein interactions for RNA: ENST00000496910.1

EXOSC3-208, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 217 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-208ENST00000496910 HHEXQ03014 270 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 GALNT2Q10471 571 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 AP1B1Q10567 949 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 TBCEQ15813 527 aaPredicted RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 TBCCQ15814 346 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 KRTAP21-3Q3LHN1 58 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 SPATS1Q496A3 300 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 PDCD4Q53EL6 469 aaKnown RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 HS1BP3Q53T59 392 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 NOMO2Q5JPE7 1267 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 C1orf141Q5JVX7 400 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 ATG16L1Q676U5 607 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 NAA16Q6N069 864 aaPredicted RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 DENND5BQ6ZUT9 1274 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 MED25Q71SY5 747 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 RNF44Q7L0R7 432 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 RRAGAQ7L523 313 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 ASCL5Q7RTU5 278 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 PRPF39Q86UA1 669 aaKnown RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 SLC44A2Q8IWA5 706 aaPredicted RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 PALM2Q8IXS6 379 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 GALNT4Q8N4A0 578 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 VGLL2Q8N8G2 317 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 Q8NA96 180 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 CACTINQ8WUQ7 758 aaKnown RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 KBTBD7Q8WVZ9 684 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 ZNF622Q969S3 477 aaKnown RBP eCLIP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 PPP1R9BQ96SB3 815 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 EYA3Q99504 573 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 REEP2Q9BRK0 252 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 TLR10Q9BXR5 811 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 EDEM3Q9BZQ6 932 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 ABHD16BQ9H3Z7 469 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 DEF6Q9H4E7 631 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 GSTO2Q9H4Y5 243 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 GPR35Q9HC97 309 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 SEPSECSQ9HD40 501 aaKnown RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 SARS2Q9NP81 518 aaKnown RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 EIF2B3Q9NR50 452 aaKnown RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 TBC1D23Q9NUY8 699 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 SEPT11Q9NVA2 429 aaKnown RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 MRPS18AQ9NVS2 196 aaKnown RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 HSFX1Q9UBD0 423 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 BLOC1S6Q9UL45 172 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 HDAC5Q9UQL6 1122 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 KNSTRNQ9Y448 316 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 CEP152O94986 1710 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 TRPM3Q9HCF6 1732 aaPredicted RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 ALPK3Q96L96 1907 aa3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 COL4A4P53420 1690 aaPredicted RBP3.97□□□□□ -1.77
EXOSC3-208ENST00000496910 SYNRGQ9UMZ2 1314 aa3.96□□□□□ -1.77
EXOSC3-208ENST00000496910 GVINP1Q7Z2Y8 2422 aa3.96□□□□□ -1.77
EXOSC3-208ENST00000496910 SPG11Q96JI7 2443 aa3.96□□□□□ -1.77
EXOSC3-208ENST00000496910 ZFYVE9O95405 1425 aa3.96□□□□□ -1.77
EXOSC3-208ENST00000496910 MYO9BQ13459 2157 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 GTPBP1O00178 669 aaKnown RBP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 B3GALNT1O75752 331 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 ZFPL1O95159 310 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 ANXA1P04083 346 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 CNPP09543 421 aaKnown RBP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 FCER1AP12319 257 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 NPPBP16860 134 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 STMN1P16949 149 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 HDCP19113 662 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 ATP5F1P24539 256 aaPredicted RBP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 MGAT1P26572 445 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 ATP5DP30049 168 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 NNMTP40261 264 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 HNF4AP41235 474 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 PIK3CGP48736 1102 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 AARSP49588 968 aaKnown RBP eCLIP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 ZNF132P52740 706 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 SLC12A2P55011 1212 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 PSMC1P62191 440 aaKnown RBP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 AP2B1P63010 937 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 UBXN1Q04323 297 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 OCA2Q04671 838 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 CALD1Q05682 793 aaKnown RBP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 LRMPQ12912 555 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 CHAF1BQ13112 559 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 PPP2R5BQ15173 497 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 DUSP28Q4G0W2 176 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 PARP10Q53GL7 1025 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 KRTCAP3Q53RY4 240 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 RABL3Q5HYI8 236 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 ARMC4Q5T2S8 1044 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 TMTC4Q5T4D3 741 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 ISM2Q6H9L7 571 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 ALKBH5Q6P6C2 394 aaKnown RBP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 CNSTQ6PJW8 725 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 RNF207Q6ZRF8 634 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 RHOUQ7L0Q8 258 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 TMPRSS9Q7Z410 1059 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 PPP1R32Q7Z5V6 425 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 PDSS2Q86YH6 399 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 GATAD2AQ86YP4 633 aa3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 CCDC117Q8IWD4 279 aaPredicted RBP3.96□□□□□ -1.78
EXOSC3-208ENST00000496910 RPAP2Q8IXW5 612 aaPredicted RBP3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms