RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 CBX4O00257 560 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 IRAK2O43187 625 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 FBXO21O94952 628 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 LUC7L3O95232 432 aaKnown RBP13.09□□□□□ -0.31
SKA1-205ENST00000494518 WNT1P04628 370 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 STK19P49842 368 aaPredicted RBP13.09□□□□□ -0.31
SKA1-205ENST00000494518 GALCP54803 685 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 STX17P56962 302 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 C21orf59P57076 290 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 PITX1P78337 314 aaPredicted RBP13.09□□□□□ -0.31
SKA1-205ENST00000494518 STIM1Q13586 685 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 CST6Q15828 149 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 HNRNPA1L2Q32P51 320 aaKnown RBP13.09□□□□□ -0.31
SKA1-205ENST00000494518 ZC3H12AQ5D1E8 599 aaKnown RBP13.09□□□□□ -0.31
SKA1-205ENST00000494518 MPP7Q5T2T1 576 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 SYPL2Q5VXT5 272 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 DHRS13Q6UX07 377 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 DBX2Q6ZNG2 339 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 TMPRSS7Q7RTY8 843 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 CHSY1Q86X52 802 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 APCDD1Q8J025 514 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 STK40Q8N2I9 435 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 LMO3Q8TAP4 145 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 SPATA20Q8TB22 786 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 IGSF8Q969P0 613 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 RPL10LQ96L21 214 aaKnown RBP13.09□□□□□ -0.31
SKA1-205ENST00000494518 HSFY1Q96LI6 401 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 SERPINB11Q96P15 392 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 NEUROG2Q9H2A3 272 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 EBF2Q9HAK2 575 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 KIAA1522Q9P206 1035 aaPredicted RBP13.09□□□□□ -0.31
SKA1-205ENST00000494518 SLCO3A1Q9UIG8 710 aa13.09□□□□□ -0.31
SKA1-205ENST00000494518 SYNJ2BP-COX16A0A087WUM0 186 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 PLK4O00444 970 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 BIN1O00499 593 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 CAPN9O14815 690 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 WNT9AO14904 365 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 RNASEH1O60930 286 aaKnown RBP13.08□□□□□ -0.32
SKA1-205ENST00000494518 ASLP04424 464 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 VAV1P15498 845 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 SLC8A1P32418 973 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 GRK6P43250 576 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 CYP4F3Q08477 520 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 STILQ15468 1287 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 C9orf64Q5T6V5 341 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 TTI2Q6NXR4 508 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 PDZD3Q86UT5 571 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 CCDC117Q8IWD4 279 aaPredicted RBP13.08□□□□□ -0.32
SKA1-205ENST00000494518 AADATQ8N5Z0 425 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 NELFBQ8WX92 580 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 AZIN2Q96A70 460 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 SLC39A13Q96H72 371 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 DHTKD1Q96HY7 919 aaPredicted RBP13.08□□□□□ -0.32
SKA1-205ENST00000494518 CEP63Q96MT8 703 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 OMDQ99983 421 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 DDX50Q9BQ39 737 aaKnown RBP13.08□□□□□ -0.32
SKA1-205ENST00000494518 ACE2Q9BYF1 805 aaPredicted RBP13.08□□□□□ -0.32
SKA1-205ENST00000494518 INTS2Q9H0H0 1204 aaKnown RBP13.08□□□□□ -0.32
SKA1-205ENST00000494518 OSGEPQ9NPF4 335 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 ACP6Q9NPH0 428 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 AASDHPPTQ9NRN7 309 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 COX16Q9P0S2 106 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 TJP2Q9UDY2 1190 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 FTSJ1Q9UET6 329 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 CYTH4Q9UIA0 394 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 TLR6Q9Y2C9 796 aa13.08□□□□□ -0.32
SKA1-205ENST00000494518 GCN1Q92616 2671 aaKnown RBP13.08□□□□□ -0.32
SKA1-205ENST00000494518 A0A1W2PPC4 97 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 TRABD2BA6NFA1 517 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 E5RJQ4 531 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 PAPSS1O43252 624 aaPredicted RBP13.07□□□□□ -0.32
SKA1-205ENST00000494518 TNFSF14O43557 240 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 DKK1O94907 266 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 LETM1O95202 739 aaPredicted RBP13.07□□□□□ -0.32
SKA1-205ENST00000494518 APOEP02649 317 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 PDGFRAP16234 1089 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 TACR2P21452 398 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 BMP6P22004 513 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 GPD2P43304 727 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 CETN1Q12798 172 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 KCNH2Q12809 1159 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 DNAJC3Q13217 504 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 KCNJ12Q14500 433 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 TAF5Q15542 800 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 RNF219Q5W0B1 726 aaPredicted RBP13.07□□□□□ -0.32
SKA1-205ENST00000494518 USP30Q70CQ3 517 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 ZNF557Q8N988 423 aaPredicted RBP13.07□□□□□ -0.32
SKA1-205ENST00000494518 EHBP1Q8NDI1 1231 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 OR14C36Q8NHC7 312 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 LRIG1Q96JA1 1093 aa13.07□□□□□ -0.32
SKA1-205ENST00000494518 HOOK1Q9UJC3 728 aaKnown RBP13.07□□□□□ -0.32
SKA1-205ENST00000494518 COL5A1P20908 1838 aaPredicted RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 A0A1B0GTQ1 180 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 EDDM13A0A1B0GTR0 161 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 LRRC72A6NJI9 287 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 PPP1R3GB7ZBB8 358 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 VILLO15195 856 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 THAP12O43422 761 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 PCDHGA12O60330 932 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 MOCS3O95396 460 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms