RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 TAS1R3Q7RTX0 852 aa11.97□□□□□ -0.49
HDAC4-210ENST00000493582 PCDH20Q8N6Y1 951 aaKnown RBP11.97□□□□□ -0.49
HDAC4-210ENST00000493582 RP9Q8TA86 221 aaKnown RBP11.97□□□□□ -0.49
HDAC4-210ENST00000493582 ATXN7L3BQ96GX2 97 aa11.97□□□□□ -0.49
HDAC4-210ENST00000493582 EIF2AQ9BY44 585 aaKnown RBP11.97□□□□□ -0.49
HDAC4-210ENST00000493582 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.97□□□□□ -0.499e-8■■■■□ 23.7
HDAC4-210ENST00000493582 DUS2Q9NX74 493 aaKnown RBP11.97□□□□□ -0.49
HDAC4-210ENST00000493582 NCKIPSDQ9NZQ3 722 aa11.97□□□□□ -0.49
HDAC4-210ENST00000493582 USP18Q9UMW8 372 aa11.97□□□□□ -0.49
HDAC4-210ENST00000493582 PCDHB12Q9Y5F1 795 aa11.97□□□□□ -0.49
HDAC4-210ENST00000493582 EXTL3O43909 919 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 BAIAP3O94812 1187 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 CHRNGP07510 517 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 TYK2P29597 1187 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 TAP1Q03518 808 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 TRAF2Q12933 501 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 NME3Q13232 169 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 RGS21Q2M5E4 152 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 STXBP5Q5T5C0 1151 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 METTL21CQ5VZV1 264 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 NXNQ6DKJ4 435 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 ANKRD26P1Q6NSI1 321 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 ZBTB49Q6ZSB9 765 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 TMEM179Q6ZVK1 233 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 SH3BP5LQ7L8J4 393 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 CMC1Q7Z7K0 106 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 PPWD1Q96BP3 646 aaKnown RBP11.96□□□□□ -0.49
HDAC4-210ENST00000493582 ITPKCQ96DU7 683 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 ARHGAP28Q9P2N2 729 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 CYTH4Q9UIA0 394 aa11.96□□□□□ -0.49
HDAC4-210ENST00000493582 C1orf232A0A0U1RR37 186 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 WDR27A2RRH5 827 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 CLIC3O95833 236 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 LIG4P49917 911 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 HSPA2P54652 639 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 PSMC1P62191 440 aaKnown RBP11.96□□□□□ -0.5
HDAC4-210ENST00000493582 IGBP1P78318 339 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 CLDN10P78369 228 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 NHSL2Q5HYW2 709 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 DENND1BQ6P3S1 775 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 HERC6Q8IVU3 1022 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 PLD6Q8N2A8 252 aaKnown RBP11.96□□□□□ -0.5
HDAC4-210ENST00000493582 PEBP4Q96S96 227 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 NPLQ9BXD5 320 aaPredicted RBP11.96□□□□□ -0.5
HDAC4-210ENST00000493582 ANKRD60Q9BZ19 345 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 IMPG2Q9BZV3 1241 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 SDCBP2Q9H190 292 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 RSAD1Q9HA92 442 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 MOCS1Q9NZB8 636 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 HESX1Q9UBX0 185 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 PPP1R1BQ9UD71 204 aaPredicted RBP11.96□□□□□ -0.5
HDAC4-210ENST00000493582 VPS51Q9UID3 782 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 VPS28Q9UK41 221 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 PCDHA11Q9Y5I1 949 aa11.96□□□□□ -0.5
HDAC4-210ENST00000493582 GPR25O00155 361 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 SOCS2O14508 198 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 CNOT3O75175 753 aaKnown RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 VAPBO95292 243 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 GARTP22102 1010 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 TBXAS1P24557 533 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 RCVRNP35243 200 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 DPYSQ14117 519 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 PTK2BQ14289 1009 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 CHST15Q7LFX5 561 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 PQLC3Q8N755 202 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 FAM110BQ8TC76 370 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 DCPSQ96C86 337 aaKnown RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 HAPLN2Q9GZV7 340 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 EHMT1Q9H9B1 1298 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 PI4KBQ9UBF8 816 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 KRBA1A5PL33 1030 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 C8BP07358 591 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 MPSTP25325 297 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 ZNF132P52740 706 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 SEPT6Q14141 434 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 RAB39AQ14964 217 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 MOGQ16653 247 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 ZC3H7AQ8IWR0 971 aaKnown RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 STARD8Q92502 1023 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 SLCO4A1Q96BD0 722 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 EFCAB1Q9HAE3 211 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 GID8Q9NWU2 228 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 COL20A1Q9P218 1284 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 SFMBT1Q9UHJ3 866 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 AGO2Q9UKV8 859 aaKnown RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 GIT1Q9Y2X7 761 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 CFAP99D6REC4 459 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 LSM8O95777 96 aaKnown RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 TRUB2O95900 331 aaKnown RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 EPHX2P34913 555 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 NUMBP49757 651 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 DEPDC1Q5TB30 811 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 HMBOX1Q6NT76 420 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 SCARA5Q6ZMJ2 495 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 TAMM41Q96BW9 452 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 SGF29Q96ES7 293 aa11.95□□□□□ -0.5
HDAC4-210ENST00000493582 NTPCRQ9BSD7 190 aaKnown RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 FRMD8Q9BZ67 464 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-210ENST00000493582 POLR1BQ9H9Y6 1135 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms