RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ATP5BP06576 529 aaKnown RBP16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 POLR2EP19388 210 aaKnown RBP16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 CSKP41240 450 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 IL12RB1P42701 662 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 PXNP49023 591 aaPredicted RBP16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 GALCP54803 685 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 AIF1P55008 147 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 SCAPQ12770 1279 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 SLC12A1Q13621 1099 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 ZNF234Q14588 700 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 ALFQ53S48 1182 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 PITRM1Q5JRX3 1037 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 EFHC2Q5JST6 749 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 CXorf57Q6NSI4 855 aaKnown RBP16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 SLFN11Q7Z7L1 901 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 CYB5D2Q8WUJ1 264 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 ARHGEF26Q96DR7 871 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 NUP85Q9BW27 656 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 OR12D3Q9UGF7 316 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 INTS6Q9UL03 887 aaKnown RBP16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 STON1Q9Y6Q2 735 aa16.77■□□□□ 0.28
MSH5-SAPCD1-206ENST00000491552 MUC22E2RYF6 1773 aaPredicted RBP16.77■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MUC6Q6W4X9 2439 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TCRBV21S2A2A0A5A6 115 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 LILRB5O75023 590 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RNF8O76064 485 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ALDH1A2O94788 518 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ASLP04424 464 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 DLDP09622 509 aaKnown RBP16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ENPP2Q13822 863 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PLEKHG6Q3KR16 790 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FNDC3BQ53EP0 1204 aaKnown RBP16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ARTNQ5T4W7 220 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MANEALQ5VSG8 457 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CTNNBL1Q8WYA6 563 aaPredicted RBP16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TTC17Q96AE7 1141 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FAM122AQ96E09 287 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PHOX2BQ99453 314 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ZYG11BQ9C0D3 744 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SPTLC3Q9NUV7 552 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MPP6Q9NZW5 540 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PPARGC1AQ9UBK2 798 aaKnown RBP16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 EBF1Q9UH73 591 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FZD10Q9ULW2 581 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PLA2G4CQ9UP65 541 aa16.76■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 WDFY4Q6ZS81 3184 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQF6 199 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 WASH3PC4AMC7 463 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 AXIN1O15169 862 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 H2AFZP0C0S5 128 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MZF1P28698 734 aaPredicted RBP16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CDC25BP30305 580 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PLA2G5P39877 138 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ANO7Q6IWH7 933 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SERPINA13PQ6UXR4 307 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 H2AFVQ71UI9 128 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TFAP2DQ7Z6R9 452 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SETD3Q86TU7 594 aaPredicted RBP16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RASSF3Q86WH2 238 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 APCDD1Q8J025 514 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MDGA1Q8NFP4 955 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TBC1D31Q96DN5 1066 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PPP1R9BQ96SB3 815 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 NCAPGQ9BPX3 1015 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PACSIN1Q9BY11 444 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ANAPC7Q9UJX3 599 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TBC1D30Q9Y2I9 924 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RAD54BQ9Y620 910 aa16.75■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FANCMQ8IYD8 2048 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PROB1E7EW31 1015 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FAM72CH0Y354 149 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 LRIG2O94898 1065 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RHOCP08134 193 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 TMEM253P0C7T8 217 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PRKCHP24723 683 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 L1CAMP32004 1257 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CNR2P34972 360 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PLK1P53350 603 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PIGHQ14442 188 aaPredicted RBP16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 STARD3Q14849 445 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ACAP1Q15027 740 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PTPRNQ16849 979 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FAM72AQ5TYM5 149 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RNF219Q5W0B1 726 aaPredicted RBP16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FAM72DQ6L9T8 149 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 KIAA1211LQ6NV74 962 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 RWDD4Q6NW29 188 aaKnown RBP16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 FAM72BQ86X60 149 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PYROXD2Q8N2H3 581 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ARFGAP1Q8N6T3 406 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 OR52K2Q8NGK3 314 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 ZNF564Q8TBZ8 553 aaPredicted RBP16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 HMGB4Q8WW32 186 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 PANX2Q96RD6 677 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MAGEB5Q9BZ81 275 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 MUC3BQ9H195 1237 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 SEMA4AQ9H3S1 761 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 CD248Q9HCU0 757 aa16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 BCCIPQ9P287 314 aaKnown RBP eCLIP16.74■□□□□ 0.27
MSH5-SAPCD1-206ENST00000491552 UVRAGQ9P2Y5 699 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms