RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 LRTOMTQ8WZ04 291 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 C1QTNF5Q9BXJ0 243 aa3.67□□□□□ -1.82
SMC4-220ENST00000488017 TYW1Q9NV66 732 aaKnown RBP3.67□□□□□ -1.82
SMC4-220ENST00000488017 ANTXRLA6NF34 631 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 LIASO43766 372 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 COQ9O75208 318 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 ANXA2P07355 339 aaKnown RBP3.66□□□□□ -1.82
SMC4-220ENST00000488017 CHRNB2P17787 502 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 SLC37A1P57057 533 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 TUBA1BP68363 451 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 ACSM2AQ08AH3 577 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 C10orf76Q5T2E6 689 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 Q6ZSV7 163 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 ZNF367Q7RTV3 350 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 DCUN1D3Q8IWE4 304 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 KDM1BQ8NB78 822 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 ADPRHL1Q8NDY3 354 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 FIZ1Q96SL8 496 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 EIF3CQ99613 913 aaKnown RBP3.66□□□□□ -1.82
SMC4-220ENST00000488017 TNFSF13BQ9Y275 285 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 SNED1Q8TER0 1413 aa3.66□□□□□ -1.82
SMC4-220ENST00000488017 LDLRP01130 860 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 SLC16A2P36021 539 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 PMS2P54278 862 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 GALNT3Q14435 633 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 LCE3AQ5TA76 89 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 FAXCQ5TGI0 409 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 RNF220Q5VTB9 566 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 FJX1Q86VR8 437 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 FAM217AQ8IXS0 508 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 FAM185AQ8N0U4 392 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 EXD3Q8N9H8 876 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 DBF4BQ8NFT6 615 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 TMED6Q8WW62 240 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 ZNF419Q96HQ0 510 aaPredicted RBP3.65□□□□□ -1.83
SMC4-220ENST00000488017 NUDT22Q9BRQ3 303 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 RTFDC1Q9BY42 306 aaPredicted RBP3.65□□□□□ -1.83
SMC4-220ENST00000488017 IL25Q9H293 177 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 FAM204AQ9H8W3 233 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 DONSONQ9NYP3 566 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 IL36RNQ9UBH0 155 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 PCDHB7Q9Y5E2 793 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 SLC4A4Q9Y6R1 1079 aa3.65□□□□□ -1.83
SMC4-220ENST00000488017 COL2A1P02458 1487 aaPredicted RBP3.65□□□□□ -1.83
SMC4-220ENST00000488017 CXorf65A6NEN9 183 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 M0QZQ0 153 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 ZSCAN9O15535 394 aaPredicted RBP3.64□□□□□ -1.83
SMC4-220ENST00000488017 MSI1O43347 362 aaKnown RBP3.64□□□□□ -1.83
SMC4-220ENST00000488017 PAK4O96013 591 aaPredicted RBP3.64□□□□□ -1.83
SMC4-220ENST00000488017 RPL17P18621 184 aaKnown RBP3.64□□□□□ -1.83
SMC4-220ENST00000488017 ANOS1P23352 680 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 AMTP48728 403 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 CRIP2P52943 208 aaPredicted RBP3.64□□□□□ -1.83
SMC4-220ENST00000488017 MCL1Q07820 350 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 MRNIPQ6NTE8 343 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 C16orf89Q6UX73 402 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 PIK3AP1Q6ZUJ8 805 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 STRBPQ96SI9 672 aaKnown RBP3.64□□□□□ -1.83
SMC4-220ENST00000488017 B3GNT4Q9C0J1 378 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 SFXN1Q9H9B4 322 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 AS3MTQ9HBK9 375 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 TXNRD2Q9NNW7 524 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 C1orf112Q9NSG2 853 aa3.64□□□□□ -1.83
SMC4-220ENST00000488017 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.64□□□□□ -1.83
SMC4-220ENST00000488017 LMTK3Q96Q04 1460 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 A0A087WZ62 844 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 OR2W5A6NFC9 320 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 SAC3D1A6NKF1 404 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 ASAP2O43150 1006 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 MGEA5O60502 916 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 KCNJ13O60928 360 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 ALDH1L1O75891 902 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 U2AF1L5P0DN76 240 aaPredicted RBP3.63□□□□□ -1.83
SMC4-220ENST00000488017 MST1P26927 711 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 U2AF1Q01081 240 aaKnown RBP eCLIP3.63□□□□□ -1.83
SMC4-220ENST00000488017 TRAF3Q13114 568 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 ATP1A4Q13733 1029 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 LCE3CQ5T5A8 94 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 USP17L6PQ6QN14 398 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 LMNTD1Q8N9Z9 388 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 CTCFLQ8NI51 663 aaPredicted RBP3.63□□□□□ -1.83
SMC4-220ENST00000488017 ZCRB1Q8TBF4 217 aaKnown RBP3.63□□□□□ -1.83
SMC4-220ENST00000488017 EPYCQ99645 322 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 POLDIP3Q9BY77 421 aaKnown RBP3.63□□□□□ -1.83
SMC4-220ENST00000488017 ABHD16BQ9H3Z7 469 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 FBXO28Q9NVF7 368 aa3.63□□□□□ -1.83
SMC4-220ENST00000488017 UBE2J1Q9Y385 318 aaPredicted RBP3.63□□□□□ -1.83
SMC4-220ENST00000488017 KCNJ18B7U540 433 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 THAP12O43422 761 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 KAT7O95251 611 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 ITGB8P26012 769 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 TNFSF8P32971 234 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 NUDT6P53370 316 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 NSUN2Q08J23 767 aaKnown RBP eCLIP3.62□□□□□ -1.83
SMC4-220ENST00000488017 GRSF1Q12849 480 aaKnown RBP eCLIP3.62□□□□□ -1.83
SMC4-220ENST00000488017 ERAP2Q6P179 960 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 WDR93Q6P2C0 686 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 CRTC1Q6UUV9 634 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 KRT27Q7Z3Y8 459 aa3.62□□□□□ -1.83
SMC4-220ENST00000488017 IGFN1Q86VF2 1251 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms