RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 NRP1O14786 923 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 PPP1R12AO14974 1030 aaPredicted RBP18.39■□□□□ 0.54
VIM-206ENST00000487938 RALBP11234 206 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 SKIP12755 728 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 ANPEPP15144 967 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 PTPN1P18031 435 aaKnown RBP18.39■□□□□ 0.54
VIM-206ENST00000487938 AOC1P19801 751 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 ACTR3P61158 418 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 MRPS35P82673 323 aaKnown RBP18.39■□□□□ 0.54
VIM-206ENST00000487938 DPYSQ14117 519 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 RALGPS1Q5JS13 557 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 RABGAP1LQ5R372 815 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 CTU1Q7Z7A3 348 aaKnown RBP18.39■□□□□ 0.54
VIM-206ENST00000487938 SLC7A14Q8TBB6 771 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 NT5C3BQ969T7 300 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 ZNF669Q96BR6 464 aaPredicted RBP18.39■□□□□ 0.54
VIM-206ENST00000487938 MAML3Q96JK9 1138 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 SNX15Q9NRS6 342 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 SIN3BO75182 1162 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 NPR3P17342 541 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 ERCC2P18074 760 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 GP5P40197 560 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 TKTL1P51854 596 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 PAFAH1B3Q15102 231 aaKnown RBP18.39■□□□□ 0.53
VIM-206ENST00000487938 RALGAPA2Q2PPJ7 1873 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 TRMT5Q32P41 509 aaKnown RBP18.39■□□□□ 0.53
VIM-206ENST00000487938 SV2CQ496J9 727 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 WSCD1Q658N2 575 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 STRA8Q7Z7C7 330 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 MYLK4Q86YV6 388 aaPredicted RBP18.39■□□□□ 0.53
VIM-206ENST00000487938 SIX6OS1Q8N1H7 587 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 GSTCDQ8NEC7 633 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 WNT8BQ93098 351 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 GORASP1Q9BQQ3 440 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 NAT9Q9BTE0 207 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 OXCT2Q9BYC2 517 aaPredicted RBP18.39■□□□□ 0.53
VIM-206ENST00000487938 DLGAP2Q9P1A6 1054 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 SOX13Q9UN79 622 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 LRCH1Q9Y2L9 728 aa18.39■□□□□ 0.53
VIM-206ENST00000487938 PLXNB2O15031 1838 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 I6L893 689 aaPredicted RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 DCLK1O15075 740 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 USP1O94782 785 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 SORBS2O94875 1100 aaKnown RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 ATP5BP06576 529 aaKnown RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 CPA3P15088 417 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 YBX3P16989 372 aaKnown RBP eCLIP18.38■□□□□ 0.533e-8■■□□□ 11.9
VIM-206ENST00000487938 NCF2P19878 526 aaPredicted RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 PTPN3P26045 913 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 PEX19P40855 299 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 PNPLA4P41247 253 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 ABCE1P61221 599 aaKnown RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 DBN1Q16643 649 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 UBXN11Q5T124 520 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 LDLRAD1Q5T700 205 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 GRTP1Q5TC63 336 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 KIAA0319Q5VV43 1072 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 CLEC20AQ6ZU45 233 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 PSTKQ8IV42 348 aaKnown RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 DNAAF3Q8N9W5 541 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 APOL2Q9BQE5 337 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 C1orf21Q9H246 121 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 CAB39LQ9H9S4 337 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 IGSF9Q9P2J2 1179 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 ANGPTL2Q9UKU9 493 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 STAP1Q9ULZ2 295 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 STRNO43815 780 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 ATP9BO43861 1147 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 FYNP06241 537 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 HOXD8P13378 290 aaPredicted RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 ADRA1BP35368 520 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 GARSP41250 739 aaKnown RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 USP4Q13107 963 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 SNX17Q15036 470 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 ZRSR2Q15696 482 aaKnown RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 DLG2Q15700 870 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 SPANXN3Q5MJ09 141 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 GPR142Q7Z601 462 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.38■□□□□ 0.53
VIM-206ENST00000487938 LENG1Q96BZ8 264 aaPredicted RBP18.38■□□□□ 0.53
VIM-206ENST00000487938 CPNE1Q99829 537 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 TINF2Q9BSI4 451 aa18.38■□□□□ 0.53
VIM-206ENST00000487938 LOC100653049A0A140TA62 436 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 BTBD19C9JJ37 291 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 ZBTB24O43167 697 aaPredicted RBP18.37■□□□□ 0.53
VIM-206ENST00000487938 KRT34O76011 436 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 KLHL2O95198 593 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 CCNHP51946 323 aaPredicted RBP18.37■□□□□ 0.53
VIM-206ENST00000487938 IRF9Q00978 393 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 NAB1Q13506 487 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 PEX6Q13608 980 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 INSCQ1MX18 579 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 HSP90AA5PQ58FG0 334 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 CERCAMQ5T4B2 595 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 FSTL4Q6MZW2 842 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 IRGCQ6NXR0 463 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 BNIPLQ7Z465 357 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 LIMS2Q7Z4I7 341 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 ZNF467Q7Z7K2 595 aaPredicted RBP18.37■□□□□ 0.53
VIM-206ENST00000487938 GTF3C2Q8WUA4 911 aaPredicted RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms