RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 RNF125Q96EQ8 232 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 WDYHV1Q96HA8 205 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 VPS50Q96JG6 964 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 CFAP53Q96M91 514 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 ADAM2Q99965 735 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 SERHL2Q9H4I8 314 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 NRDE2Q9H7Z3 1164 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TRIM36Q9NQ86 728 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 TMLHEQ9NVH6 421 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 ORC3Q9UBD5 711 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 POLKQ9UBT6 870 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 NRBP1Q9UHY1 535 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 CCNL1Q9UK58 526 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 SLC12A4Q9UP95 1085 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 RCE1Q9Y256 329 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 UBE2J1Q9Y385 318 aaPredicted RBP4.45□□□□□ -1.7
PTCD3-216ENST00000487043 CYP46A1Q9Y6A2 500 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 ANKRD26Q9UPS8 1709 aa4.45□□□□□ -1.7
PTCD3-216ENST00000487043 KIF20BQ96Q89 1820 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 INSRP06213 1382 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 A6NCN8 305 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 SAC3D1A6NKF1 404 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 A8MVJ9 347 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 PEX12O00623 359 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 MUSKO15146 869 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 SPRY2O43597 315 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 PMPCBO75439 489 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 GFPT2O94808 682 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 SPDEFO95238 335 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 DDX58O95786 925 aaKnown RBP4.44□□□□□ -1.7
PTCD3-216ENST00000487043 CSF1P09603 554 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 CREB1P16220 341 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 ABCD3P28288 659 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 GKP32189 559 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 MCM5P33992 734 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 GRK5P34947 590 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 SELENOPP49908 381 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 RPL15P61313 204 aaKnown RBP4.44□□□□□ -1.7
PTCD3-216ENST00000487043 DCAF7P61962 342 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 DEUP1Q05D60 604 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 TDGQ13569 410 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 TP53BP2Q13625 1128 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 DCTN1Q14203 1278 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 ANO7Q6IWH7 933 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 ARMC6Q6NXE6 501 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 C16orf89Q6UX73 402 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 TMPRSS6Q8IU80 811 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 ANKRD52Q8NB46 1076 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 NPIPB3Q92617 1050 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 PRR11Q96HE9 360 aaPredicted RBP4.44□□□□□ -1.7
PTCD3-216ENST00000487043 FAR2Q96K12 515 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 C7orf26Q96N11 449 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 WWC2-AS2Q96NR7 200 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 PIGSQ96S52 555 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 HERC2P3Q9BVR0 1158 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 ZNF341Q9BYN7 854 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 ARHGAP39Q9C0H5 1083 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 PCED1AQ9H1Q7 454 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 DKK3Q9UBP4 350 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 TESQ9UGI8 421 aaKnown RBP4.44□□□□□ -1.7
PTCD3-216ENST00000487043 ASAP1Q9ULH1 1129 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 VPS4AQ9UN37 437 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 CNPY2Q9Y2B0 182 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 SLC45A1Q9Y2W3 748 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 KIF1AQ12756 1690 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 NRKQ7Z2Y5 1582 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 NPHP3Q7Z494 1330 aa4.44□□□□□ -1.7
PTCD3-216ENST00000487043 LTBP4Q8N2S1 1624 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 PNPLA6Q8IY17 1366 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 A0A087X0M5 115 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 CCDC187A0A096LP49 1063 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 A0A1B0GX30 115 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 ANKRD18BA2A2Z9 1011 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 AP4M1O00189 453 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 CES2O00748 559 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 FIBPO43427 364 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 TIMM44O43615 452 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 CHRM2P08172 466 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 IL6RP08887 468 aaPredicted RBP4.43□□□□□ -1.7
PTCD3-216ENST00000487043 CHN1P15882 459 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 ZNF37AP17032 561 aaPredicted RBP4.43□□□□□ -1.7
PTCD3-216ENST00000487043 LAG3P18627 525 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 MMP8P22894 467 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 ACRV1P26436 265 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 ZFP36P26651 326 aaKnown RBP4.43□□□□□ -1.7
PTCD3-216ENST00000487043 PSMC2P35998 433 aaKnown RBP4.43□□□□□ -1.7
PTCD3-216ENST00000487043 GGT5P36269 586 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 RCAN1P53805 252 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 NXPH1P58417 271 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 RPP30P78346 268 aaKnown RBP4.43□□□□□ -1.7
PTCD3-216ENST00000487043 PRKG2Q13237 762 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 CBFBQ13951 182 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 WDR43Q15061 677 aaKnown RBP eCLIP4.43□□□□□ -1.7
PTCD3-216ENST00000487043 NFIL3Q16649 462 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 SPDYAQ5MJ70 313 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 CBWD5Q5RIA9 395 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 TEDDM1Q5T9Z0 273 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 BRINP3Q76B58 766 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 LRRC8DQ7L1W4 858 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 R3HCC1LQ7Z5L2 792 aaKnown RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms