RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 Q6ZSN1 163 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 BBS12Q6ZW61 710 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 ZNF365Q70YC5 407 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 INTS8Q75QN2 995 aaKnown RBP4.36□□□□□ -1.71
VPS41-212ENST00000482217 PLPPR4Q7Z2D5 763 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 ATG9AQ7Z3C6 839 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 UBE3BQ7Z3V4 1068 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 CPLX4Q7Z7G2 160 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 PPP1R3BQ86XI6 285 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 TMEM57Q8N5G2 664 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 FITM2Q8N6M3 262 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 LINC00469Q8N7U9 141 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 MB21D1Q8N884 522 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 PCSK9Q8NBP7 692 aaKnown RBP4.36□□□□□ -1.71
VPS41-212ENST00000482217 DENND6BQ8NEG7 585 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 GPR150Q8NGU9 434 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 FIBINQ8TAL6 211 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 AGR3Q8TD06 166 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 NCSTNQ92542 709 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 SUCLG2Q96I99 432 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 FEM1CQ96JP0 617 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 AGAP2Q99490 1192 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 THUMPD3Q9BV44 507 aaKnown RBP4.36□□□□□ -1.71
VPS41-212ENST00000482217 FUT8Q9BYC5 575 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 NACAP1Q9BZK3 213 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 FAM129AQ9BZQ8 928 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 WNT5BQ9H1J7 359 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 SYNCQ9H7C4 482 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 FBXO34Q9NWN3 711 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 CACNG4Q9UBN1 327 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 OGDHLQ9ULD0 1010 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 NAALADL1Q9UQQ1 740 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 TRAF3IP3Q9Y228 551 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 CAB39Q9Y376 341 aaPredicted RBP4.36□□□□□ -1.71
VPS41-212ENST00000482217 KIF3AQ9Y496 699 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 PCDHA1Q9Y5I3 950 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 ZNF804BA4D1E1 1349 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 ATP8B3O60423 1300 aa4.36□□□□□ -1.71
VPS41-212ENST00000482217 URADA6NGE7 173 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 DRGXA6NNA5 263 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 A8MXE2 369 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ISM1B1AKI9 464 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ASNA1O43681 348 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 SLC25A17O43808 307 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 TBC1D4O60343 1298 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ZNF254O75437 659 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 BCAS2O75934 225 aaPredicted RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 REC8O95072 547 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 C22orf31O95567 290 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 TPOP07202 933 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ASGR1P07306 291 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ITGA5P08648 1049 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ZNF853P0CG23 659 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 LAMP2P13473 410 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ACO1P21399 889 aaKnown RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 DNAJB1P25685 340 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 CST5P28325 142 aaPredicted RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 SLC6A4P31645 630 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 DHPSP49366 369 aaPredicted RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 SELENOPP49908 381 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 RABGGTBP53611 331 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ACTR1AP61163 376 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ACY1Q03154 408 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 RUNX1T1Q06455 604 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 MXD4Q14582 209 aaPredicted RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 ICAM4Q14773 271 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ARHGEF6Q15052 776 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 RAB30Q15771 203 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 PROSER3Q2NL68 480 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 CCDC57Q2TAC2 916 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 USP39Q53GS9 565 aaKnown RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 C3orf38Q5JPI3 329 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 CCDC122Q5T0U0 273 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ATPAF1Q5TC12 328 aaPredicted RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 CYP4A22Q5TCH4 519 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 METTL11BQ5VVY1 283 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 C1QL3Q5VWW1 255 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 PM20D1Q6GTS8 502 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 MTHFD1LQ6UB35 978 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 SUSD1Q6UWL2 747 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 RAB11FIP2Q7L804 512 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 TAGAPQ8N103 731 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 ZNF808Q8N4W9 903 aaPredicted RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 RNF169Q8NCN4 708 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 FAM216AQ8WUB2 273 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 KBTBD7Q8WVZ9 684 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 SGCDQ92629 289 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 DDX17Q92841 729 aaKnown RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 TNPO1Q92973 898 aaKnown RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 ATP6V0A1Q93050 837 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 SCAMP4Q969E2 229 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 KTI12Q96EK9 354 aaPredicted RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 PGAP3Q96FM1 320 aaPredicted RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 PDLIM5Q96HC4 596 aaKnown RBP4.35□□□□□ -1.71
VPS41-212ENST00000482217 MRGPRX1Q96LB2 322 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 MNTQ99583 582 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 TXN2Q99757 166 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 SPXQ9BT56 116 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 C1orf43Q9BWL3 253 aa4.35□□□□□ -1.71
VPS41-212ENST00000482217 FTOQ9C0B1 505 aaKnown RBP eCLIP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms