RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 MT-ND3P03897 115 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 CLCN2P51788 898 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 LAMTOR4Q0VGL1 99 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 KRT81Q14533 505 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 NRF1Q16656 503 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 AMHR2Q16671 573 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 PKDCCQ504Y2 493 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 XKR5Q6UX68 686 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 NEK10Q6ZWH5 1172 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 SAMD14Q8IZD0 417 aaPredicted RBP8.6□□□□□ -1.03
VAPB-205ENST00000476395 LILRA2Q8N149 483 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 PAF1Q8N7H5 531 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 PCDH19Q8TAB3 1148 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 SPATA18Q8TC71 538 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 LZICQ8WZA0 190 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 FBXL8Q96CD0 374 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 TIMMDC1Q9NPL8 285 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 SLC38A7Q9NVC3 462 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 SOX13Q9UN79 622 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 TRIM17Q9Y577 477 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 MAD1L1Q9Y6D9 718 aa8.6□□□□□ -1.03
VAPB-205ENST00000476395 K7EPI3 171 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 ITM2AO43736 263 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 MAP3K6O95382 1288 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 PTPN1P18031 435 aaKnown RBP8.59□□□□□ -1.03
VAPB-205ENST00000476395 CCDC14Q49A88 953 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 FAXCQ5TGI0 409 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 SLC9A4Q6AI14 798 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 FAM117BQ6P1L5 589 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 POTEHQ6S545 545 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 UTS2BQ765I0 119 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 PHTF2Q8N3S3 785 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 GSDMBQ8TAX9 411 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 ACTRT2Q8TDY3 377 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 CLIP3Q96DZ5 547 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 ZNF668Q96K58 619 aaPredicted RBP8.59□□□□□ -1.03
VAPB-205ENST00000476395 C7orf26Q96N11 449 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 TUBB6Q9BUF5 446 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 FRMD8P1Q9BZ68 369 aaPredicted RBP8.59□□□□□ -1.03
VAPB-205ENST00000476395 FZD8Q9H461 694 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 COPS7BQ9H9Q2 264 aaPredicted RBP8.59□□□□□ -1.03
VAPB-205ENST00000476395 ACSS2Q9NR19 701 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 GNEQ9Y223 722 aaKnown RBP8.59□□□□□ -1.03
VAPB-205ENST00000476395 MFHAS1Q9Y4C4 1052 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 SF3B1O75533 1304 aaKnown RBP eCLIP8.59□□□□□ -1.03
VAPB-205ENST00000476395 E2F8A0AVK6 867 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 FUOMA2VDF0 154 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 A6NL46 340 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 GPR25O00155 361 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 OGTO15294 1046 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 CHADO15335 359 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 ATXN8OSP0DMR3 200 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 CD247P20963 164 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 FGFR3P22607 806 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 YWHAGP61981 247 aaKnown RBP eCLIP8.59□□□□□ -1.03
VAPB-205ENST00000476395 ANGEL2Q5VTE6 544 aaKnown RBP8.59□□□□□ -1.03
VAPB-205ENST00000476395 UNC5AQ6ZN44 842 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 FRMD7Q6ZUT3 714 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 LRRC71Q8N4P6 559 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 MARVELD2Q8N4S9 558 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 DCLK2Q8N568 766 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 TTC13Q8NBP0 860 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 TRAPPC12Q8WVT3 735 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 ALKBH8Q96BT7 664 aaKnown RBP8.59□□□□□ -1.03
VAPB-205ENST00000476395 FAF2Q96CS3 445 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 PGLYRP2Q96PD5 576 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 NEURL2Q9BR09 285 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 RRN3Q9NYV6 651 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 HACL1Q9UJ83 578 aa8.59□□□□□ -1.03
VAPB-205ENST00000476395 CITO14578 2027 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 SH3PXD2BA1X283 911 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 SDR42E2A6NKP2 422 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 FAM159BA6NKW6 160 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 EIF3FO00303 357 aaPredicted RBP8.58□□□□□ -1.04
VAPB-205ENST00000476395 NDC80O14777 642 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 B3GALNT1O75752 331 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 STAM2O75886 525 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 CXCL8P10145 99 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 ZNF143P52747 638 aaPredicted RBP8.58□□□□□ -1.04
VAPB-205ENST00000476395 NDST2P52849 883 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 BASP1P80723 227 aaKnown RBP8.58□□□□□ -1.04
VAPB-205ENST00000476395 MBTD1Q05BQ5 628 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 EIF2B5Q13144 721 aaKnown RBP8.58□□□□□ -1.04
VAPB-205ENST00000476395 APOFQ13790 326 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 LPCAT2Q7L5N7 544 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 NDUFAF2Q8N183 169 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 ZNF280CQ8ND82 737 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 RAB3IL1Q8TBN0 382 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 DQX1Q8TE96 717 aaKnown RBP8.58□□□□□ -1.04
VAPB-205ENST00000476395 MOCOSQ96EN8 888 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 MAN1C1Q9NR34 630 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 SACM1LQ9NTJ5 587 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 TSC22D4Q9Y3Q8 395 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 COL4A4P53420 1690 aaPredicted RBP8.58□□□□□ -1.04
VAPB-205ENST00000476395 A0A1W2PQ67 120 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 TRIM49D1C9J1S8 452 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 BTBD19C9JJ37 291 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 PLOD2O00469 737 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 HMGCRP04035 888 aa8.58□□□□□ -1.04
VAPB-205ENST00000476395 KRT7P08729 469 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms