RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 KIAA0895LQ68EN5 471 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 LAYNQ6UX15 382 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.42■□□□□ 0.86
COL9A3-210ENST00000472880 KIAA1468Q9P260 1216 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 ITIH6Q6UXX5 1313 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 CFAP47Q6ZTR5 3102 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 SYNJ2BP-COX16A0A087WUM0 186 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 A0A1W2PP55 124 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 TARSL2A2RTX5 802 aaKnown RBP20.41■□□□□ 0.86
COL9A3-210ENST00000472880 SRRM3A6NNA2 597 aaPredicted RBP20.41■□□□□ 0.86
COL9A3-210ENST00000472880 BECN2A8MW95 431 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 TTC34A8MYJ7 566 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 KCNU1A8MYU2 1149 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 MID1O15344 667 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 RNASEH2AO75792 299 aaKnown RBP20.41■□□□□ 0.86
COL9A3-210ENST00000472880 SLC2A3P11169 496 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 SLC9A1P19634 815 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 ABCB4P21439 1286 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 CCT8P50990 548 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 PITX1P78337 314 aaPredicted RBP20.41■□□□□ 0.86
COL9A3-210ENST00000472880 CDK17Q00537 523 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 CAMK4Q16566 473 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 EXOC3L4Q17RC7 722 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 RABGAP1LQ5R372 815 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 C9orf64Q5T6V5 341 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 TTC39BQ5VTQ0 682 aaPredicted RBP20.41■□□□□ 0.86
COL9A3-210ENST00000472880 PASD1Q8IV76 773 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 MMAAQ8IVH4 418 aaKnown RBP20.41■□□□□ 0.86
COL9A3-210ENST00000472880 RHBDD1Q8TEB9 315 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 RNF34Q969K3 372 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 IGSF8Q969P0 613 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 NOX5Q96PH1 765 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 CDC6Q99741 560 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 OMDQ99983 421 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 DDIT4Q9NX09 232 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 COX16Q9P0S2 106 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 SERGEFQ9UGK8 458 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 AKAP13Q12802 2813 aa20.41■□□□□ 0.86
COL9A3-210ENST00000472880 LRRC72A6NJI9 287 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 HSF2BPO75031 334 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 IGHV4-34P06331 123 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 GLI1P08151 1106 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 CCR1P32246 355 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 NNMTP40261 264 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 PSMD8P48556 350 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 SLC12A1Q13621 1099 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 TAF5Q15542 800 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 NCEH1Q6PIU2 408 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 CIR1Q86X95 450 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-210ENST00000472880 APCDD1Q8J025 514 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 BAHD1Q8TBE0 780 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-210ENST00000472880 SHC3Q92529 594 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 PPP1R13BQ96KQ4 1090 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 RPL10LQ96L21 214 aaKnown RBP20.4■□□□□ 0.86
COL9A3-210ENST00000472880 SLC2A13Q96QE2 648 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 CPXM1Q96SM3 734 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 ACE2Q9BYF1 805 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-210ENST00000472880 ASNSD1Q9NWL6 643 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 FZD4Q9ULV1 537 aa20.4■□□□□ 0.86
COL9A3-210ENST00000472880 TMEM131Q92545 1883 aa20.39■□□□□ 0.86
COL9A3-210ENST00000472880 A0A1B0GVM2 712 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 TCAF2A6NFQ2 919 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 ADH1BP00325 375 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 PDGFRAP16234 1089 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 SLC8A1P32418 973 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 ANP32AP39687 249 aaKnown RBP20.39■□□□□ 0.85
COL9A3-210ENST00000472880 MTIF2P46199 727 aaKnown RBP20.39■□□□□ 0.85
COL9A3-210ENST00000472880 GALCP54803 685 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 C21orf59P57076 290 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 UBE2HP62256 183 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 RACK1P63244 317 aaKnown RBP20.39■□□□□ 0.85
COL9A3-210ENST00000472880 APBA1Q02410 837 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 EFHC1Q5JVL4 640 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 LRSAM1Q6UWE0 723 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 DBX2Q6ZNG2 339 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 SLCO6A1Q86UG4 719 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 DEFB106AQ8N104 65 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 CCAR2Q8N163 923 aaKnown RBP20.39■□□□□ 0.85
COL9A3-210ENST00000472880 NEUROG2Q9H2A3 272 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 ADAMTS1Q9UHI8 967 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 SLCO3A1Q9UIG8 710 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 RALYQ9UKM9 306 aaKnown RBP20.39■□□□□ 0.85
COL9A3-210ENST00000472880 PLXNA2O75051 1894 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 ASPMQ8IZT6 3477 aa20.39■□□□□ 0.85
COL9A3-210ENST00000472880 A0A1W2PPC4 97 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 GTPBP10A4D1E9 387 aaKnown RBP20.38■□□□□ 0.85
COL9A3-210ENST00000472880 GRAP2O75791 330 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 CTSKP43235 329 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 GRK6P43250 576 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 NUMBP49757 651 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 STK19P49842 368 aaPredicted RBP20.38■□□□□ 0.85
COL9A3-210ENST00000472880 OXCT1P55809 520 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 PTK2Q05397 1052 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 SULT2A1Q06520 285 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 EIF4EBP2Q13542 120 aaPredicted RBP20.38■□□□□ 0.85
COL9A3-210ENST00000472880 TPD52L1Q16890 204 aaPredicted RBP20.38■□□□□ 0.85
COL9A3-210ENST00000472880 INAVAQ3KP66 663 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 FAM183BPQ6ZVS7 135 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 STK40Q8N2I9 435 aa20.38■□□□□ 0.85
COL9A3-210ENST00000472880 C1orf131Q8NDD1 294 aaKnown RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms